Publications

Journal Papers – 2017

Journal Papers
  1. Ayton, A. Fazlollahi, P. Bourgeat, P. Raniga, A. Ng, Y. Lim, I. Diouf, S. Farquharson, J. Fripp, D. Ames, J. Doecke, P. Desmond, R. Ordidge, C. Masters, C. Rowe, P. Maruff, V. Villemagne, O. Salvado, A. Bush, the AIBL Research Group, “Cerebral quantitative susceptibility mapping predicts β-amyloid-related cognitive decline”, Brain, vol. 140, pp. 2112–2119, Aug 2017.
  2. Ayton, I. Diouf, A. Bush, “Evidence that iron accelerates Alzheimer’s pathology: a CSF biomarker study”, Journal of Neurosurgery Neurology and Psychiatry, vol. 0, pp. 1-5, Sep 2017.
  3. Bell, S. Puttick, S. Rose, J. Smith, P. Thomas, N. Dowson, “Design and utilisation of protocols to characterise dynamic PET uptake of two tracers using basis pursuit”, Physics in Medicine and Biology, vol. 62, pp. 4897-4916, May 2017.
  4. Bell, J. Dowling, E. Pogson, P. Metcalfe, L. Holloway, “Atlas based auto-segmentation technique incorporating inter-observer delineation uncertainty”, Journal of Physics: Conference Series, vol. 777, pp. 1-4, Feb 2017.
  5. Boyd, J. Ziviani, L. Sakzewski, I. Novak, N. Badawi, K. Pannek, C. Elliott, S. Greaves, A. Guzzetta, K. Whittingham, J. Valentine, C. Morgan, M. Wallen, A. Eliasson, L. Findlay, R. Ware, S. Fiori, S. Rose, “REACH: Study protocol of a Randomised trial of Rehabilitation very Early in Congenital Hemiplegia”, BMJ Open, vol. 7, pp. e017204, Jul 2017.
  6. Buckley, K. Sparks, M. Dekhtyar, C. Martin, S. Burnham, R. Sperling, D. Rentz, “Computerized iPad cognitive testing using NIH Toolbox and Cogstate C3 for use in clinical trials”, Journal of Prevention of Alzheimer’s Disease, vol. 4, pp. 3-11, Mar 2017.
  7. Budgeon, K. Murray, B. Turlach, V. Villemagne, D. Baker, S. Burnham, “Constructing longitudinal disease progression curves using sparse, short-term individual data with an application to Alzheimer’s Disease”, Statistics in Medicine, vol. 36, pp. 2720-2734, Jul 2017.
  8. Celler, M. Varnfield, S. Nepal, R. Sparks, J. Li, R. Jayasena, “Impact of at home telemonitoring on health services expenditure and hospital admissions in patients with chronic conditions: a before and after control intervention analysis”, Journal of Medical Internet Research, vol. 5, pp. e29, Sep 2017.
  9. Cespedes, J. Fripp, J. McGree, C. Drovandi, K. Mengersen, J. Doecke, “Comparisons of neurodegeneration over time between healthy ageing and Alzheimer’s disease cohorts via Bayesian inference”, BMJ Open, vol. 7, pp. e012174, Feb 2017.
  10. Conti, J. Mitra, S. Calderoni, K. Pannek, K. Shen, A. Pagnozzi, S. Rose, S. Mazzotti, D. Scelfo, M. Tosetti, F. Muratori, G. Cioni, A. Guzzetta, “Network over-connectivity differentiates autism spectrum disorder from other developmental disorders in toddlers: a diffusion MRI study”, Human Brain Mapping, vol. 38, pp. 2333-2344, Jan 2017.
  11. Ding, R. Jayasena, A. Maiorana, A. Dowling, S. Chen, M. Karunanithi, J. Layland, I. Edwards, “Innovative telemonitoring enhanced care program for chronic heart failure (ITEC-CHF) to improve guideline compliance and collaborative care: protocol of a multicenter randomized controlled trial”, BMJ Open, vol. 7, pp. n/a, Oct 2017.
  12. Doecke, F. Hartnell, P. Bampton, S. Bell, G. Mahy, Z. Grover, P. Lewindon, L. Jones, K. Sewel, K. Krishnaprasad, R. Prosser, D. Marr, J. Fischer, G. Thomas, J. Tehan, N. Ning, S. Cooke, K. Moss, K. Sochi, P. DeCruz, R. Grafton, S. Connor, I. Lawrance, R. Gearry, J. Andrews, G. Radford-Smith, “Infliximab vs. adalimumab in Crohn’s disease: results from 327 patients in an Australian and New Zealand observational cohort study”, Alimentary Pharmacology & Therapeutics, vol. 45, pp. 542-552, Feb 2017.
  13. Dowson, C. Baker, P. Thomas, J. Smith, S. Puttick, C. Bell, O. Salvado, S. Rose, “Federated optimisation of kinetic analysis problems”, Medical Image Analysis, vol. 35, pp. 116-132, Jan 2017.
  14. Duche, H. Saint-Jalmes, O. Acosta Tamayo, P. Raniga, P. Bourgeat, V. Dore, G. Egan, O. Salvado, “Partial volume model for brain MRI scan using MP2RAGE”, Human Brain Mapping, vol. 38, pp. 5115–5127, Oct 2017.
  15. Fatehi, L. Gray, A. Russell, “Mobile Health (mHealth) for Diabetes Care: Opportunities and Challenges”, Diabetes Technology & Therapeutics, vol. 19, pp. 1-3, Jan 2017.
  16. Frost, L. Robinson, Y. Kanagasingam, “Evaluation of cholinergic deficiency in pre-clinical Alzheimer’s disease using pupillometry”, Journal of Ophthalmology, vol. 2017, pp. 8 p, Aug 2017.
  17. Gaff, I. Winship, S. Forrest, D. Hansen, J. Clark, P. Waring, M. South, A. Sinclair, “Preparing for genomic medicine: a real world demonstration of health system change.”, npj Genomic Medicine, vol. 2, pp. 1-9, May 2017.
  18. Gardener, S. Rainey-Smith, H. Sohrabi, M. Weinborn, G. Verdile, Y. Lim, K. Harrington, K. Taddei, S. Burnham, C. Masters, S. Macaulay, C. Rowe, D. Ames, P. Maruff, R. Martins, “Increased carbohydrate intake is associated with poorer performance in verbal memory and attention in an APOE genotype- dependent manner”, Journal of Alzheimer’s Disease, vol. 58, pp. 193-201, May 2017.
  19. George, S. Fiori, J. Fripp, K. Pannek, J. Bursle, A. Guzzetta, A. Coulthard, R. Ware, S. Rose, P. Colditz, R. Boyd, “Validation of an MRI Brain Injury and Growth Scoring System in Very Preterm Infants Scanned at 29- to 35-Week Postmenstrual Age”, American Journal of Neuroradiology, vol. 38, pp. 1435-1442, Jul 2017.
  20. Ghose, J. Dowling, R. Rai, G. Liney, “Substitute CT generation from a single ultra short time echo MRI sequence: Preliminary Study”, Physics in Medicine and Biology, vol. 62, pp. 2950-2960, Mar 2017.
  21. Ghose, P. Greer, J. Sun, P. Pichler, D. Rivest-Henault, J. Mitra, H. Richardson, C. Wratten, J. Arm, L. Best, J. Dowling, “A Regression and Statistical Shape and Appearance Model based Substitute CT Generation for Standard MRI Sequence Alone External Beam Radiation Therapy Planning”, Physics in Medicine and Biology, vol. 62, pp. 8566-8577, Oct 2017.
  22. Golzan, K. Goozee, D. Georgevsky, A. Avolio, P. Chatterjee, K. Shen, V. Gupta, R. Chung, G. Savage, C. Orr, R. Martins, S. Graham, “Retinal vascular and structural changes are associated with amyloid burden in the elderly: Ophthalmic biomarkers of preclinical Alzheimer’s disease”, Alzheimer’s Research & Therapy, vol. 9, pp. 13, Mar 2017.
  23. Goozee, P. Chatterjee, I. James, K. Shen, H. Sohrabi, P. Asih, P. Dave, B. Ball, C. ManYan, K. Taddei, R. Chung, M. Garg, R. Martins, “Alterations in erythrocyte fatty acid composition in preclinical Alzheimer’s disease”, Scientific Reports, vol. 7, pp. 676, Apr 2017.
  24. Gulliford, S. Ghose, M. Ebert, A. Kennedy, J. Dowling, J. Mitra, D. Joseph, J. Denham, “Radiotherapy dose-distribution to the perirectal fat space (PRS) is related to gastrointestinal control-related complications”, Clinical and Translational Radiation Oncology, vol. 7, pp. 62-70, Nov 2017.
  25. Harrington, Y. Lim, D. Ames, J. Hassenstab, S. Laws, R. Martins, S. Rainey-Smith, J. Robertson, C. Rowe, O. Salvado, V. Dore, V. Villemagne, C. Masters, P. Maruff, “Amyloid-β associated cognitive decline in the absence of clinical disease progression and systemic illness”, Alzheimer’s and Dementia, vol. 8, pp. 156-164, Aug 2017.
  26. Hussain, J. Li, E. Brindal, Y. van Kasteren, M. Varnfield, A. Reeson, S. Berkovsky, J. Freyne, “Supporting the Delivery of Total Knee Replacements Care for Both Patients and Their Clinicians With a Mobile App and Web-Based Tool: Randomized Controlled Trial Protocol”, JMIR Research Protocols, vol. 6, pp. e32, Mar 2017.
  27. Khanna, J. Boyle, N. Good, A. Bell, J. Lind, “Analysing the ED patient journey: Discovery of bottlenecks to ED patient flow”, Emergency Medicine Australasia, vol. 29, pp. 18-23, Feb 2017.
  28. Kholghi, L. Sitbon, G. Zuccon, A. Nguyen, “Active learning reduces annotation time for clinical concept extraction”, International Journal of Medical Informatics, vol. 106, pp. 25-31, Oct 2017.
  29. Kholghi, L. De Vine, L. Sitbon, G. Zuccon, A. Nguyen, “Clinical Information Extraction Using Small Data: An Active Learning Approach Based on Sequence Representations and Word Embeddings”, Journal of the Association for Information Science and Technology, vol. 68, pp. 2543–2556, Nov 2017.
  30. Koopman, G. Zuccon, P. Bruza, “What Makes an Effective Clinical Query and Querier?”, Journal of the Association for Information Science and Technology, vol. 68, pp. 2557–2571, Sep 2017.
  31. Leroux, A. Metke Jimenez, M. Lawley, “Towards achieving semantic interoperability of clinical study data with FHIR”, Journal of Biomedical Semantics, vol. 8, pp. Article 41, Sep 2017.
  32. Li, O. Luo, P. Wang, M. Zheng, D. Wang, E. Piecuch, J. Zhu, S. Tian, Z. Tang, G. Li, Y. Ruan, “Long-read ChIA-PET for base-pair resolution mapping of chromatin interactions”, Nature Protocols, vol. 12, pp. 899-915, Mar 2017.
  33. Liddle, A. Wishink, L. Springfield, L. Gustafsson, D. Ireland, P. Silburn, “Can smartphones measure momentary quality of life and participation? A proof of concept using experience sampling surveys with university students.”, Australian Occupational Therapy Journal, pp. 1440-1630, Apr 2017.
  34. Lim, R. Williamson, S. Laws, V. Villemagne, P. Bourgeat, C. Fowler, S. Rainey-Smith, O. Salvado, R. Martins, C. Rowe, C. Masters, P. Maruff, “Effect of APOE Genotype on Amyloid Deposition, Brain Volume and Memory in Cognitively Normal Older Individuals”, Journal of Alzheimer’s disease, vol. 58, pp. 1293-1302, Jun 2017.
  35. Lim, S. Rainey-Smith, Y. Lim, S. Laws, V. Gupta, T. Porter, P. Bourgeat, D. Ames, C. Fowler, O. Salvado, V. Villemagne, C. Rowe, C. Masters, X. Zhou, R. Martins, P. Maruff, “BDNF Val66Met in preclinical Alzheimer’s disease is associated with short-term changes in episodic memory and hippocampal volume but not serum mBDNF”, International Psychogeriatrics, vol. 29, pp. 1825-1834, Nov 2017.
  36. Mohamed, Y. Kanagasingam, D. Xiao, J. Vignarajan, S. Bunt, E. Kruger, M. Tennant, “End-user acceptance of a cloud-based teledentistry system and Android phone app for remote screening for oral diseases”, Journal of Telemedicine and Telecare, vol. 23, pp. 44-52, Jan 2017.
  37. Mokhtari, Q. Zhang, G. Nourbakhsh, S. Bell, M. Karunanithi, “BLUESOUND: A New Resident Identification Sensor – Using Ultrasound Array and BLE Technology for Smart Home Platform”, IEEE Sensors Journal, vol. 17, pp. 1503-1512, Mar 2017.
  38. Neubert, K. Wilson, C. Engstrom, R. Surowiec, A. Paproki, N. Johnson, S. Crozier, J. Fripp, C. Ho, “Comparison of 3D bone models of the knee joint derived from CT and 3T MR imaging”, European Journal of Radiology, vol. 93, pp. 178–184, Aug 2017.
  39. Pagnozzi, N. Dowson, J. Doecke, S. Fiori, A. Bradley, R. Boyd, S. Rose, “Classification of brain injury from structural MRI: Validation using automated approaches in children with unilateral cerebral palsy”, PLoS ONE, vol. 12, pp. e0181605, Aug 2017.
  40. Paproki, C. Engstrom, M. Strudwick, K. Wilson, R. Surowiec, C. Ho, S. Crozier, J. Fripp, “Automated T2-mapping of the menisci from magnetic resonance images in patients with acute knee injury”, Academic Radiology, vol. 24, pp. 1295-1304, Oct 2017.
  41. Pietrzak, S. Laws, Y. Lim, S. Bender, J. Doecke, T. Porter, D. Ames, C. Fowler, C. Masters, L. Milicic, S. Rainey-Smith, V. Villemagne, C. Rowe, R. Martins, P. Maruff, “Plasma cortisol, amyloid-, and cognitive decline in preclinical Alzheimer’s disease: A 6-year prospective cohort study”, Biological Psychiatry, vol. 2, pp. 45-52, Jan 2017.
  42. Reid, A. Pagnozzi, S. Fiori, R. Boyd, N. Dowson, S. Rose, “Measuring Neuroplasticity Associated with Cerebral Palsy Rehabilitation: An MRI based Power Analysis”, International Journal of Developmental Neuroscience, vol. 58, pp. 17-25, May 2017.
  43. Reid, M. Sale, R. Cunnington, J. Mattingley, S. Rose, “Brain changes following four weeks of unimanual motor training: Evidence from fMRI-guided diffusion MRI tractography”, Human Brain Mapping, vol. 38, pp. 11, Sep 2017.
  44. Reid, A. Pagnozzi, S. Rose, “Brain changes following four weeks of unimanual motor training: Evidence from behavior, neural stimulation, cortical thickness, and functional MRI”, Human Brain Mapping, vol. 38, pp. 15, Sep 2017.
  45. Rowe, V. Dore, G. Jones, D. Baxendale, R. Mulligan, S. Bullich, A. Stephens, S. De Santi, C. Masters, L. Dinkelborg, V. Villemagne, “18F-Florbetaben Ab-Amyloid PET Expressed in the Centiloid Scale.”, European Journal of Nuclear Medicine, vol. 44, pp. 2053–2059, Nov 2017.
  46. Varnfield, S. Nepal, R. Sparks, J. Li, R. Jayasena, B. Celler, “Impact of at home telemonitoring on health services expenditure and hospital admissions in patients with chronic conditions. Results of the CSIRO Australian National Telehealth Trial”, BMC Public Health, vol. 5, pp. e29, Sep 2017.
  47. Villemagne, V. Dore, P. Bourgeat, S. Burnham, S. Laws, O. Salvado, C. Masters, C. Rowe, “Aβ-amyloid and tau imaging in dementia”, Seminars in Nuclear Medicine, vol. 47, pp. 75-88, Jan 2017.
  48. Ward, A. Fan, P. Raniga, D. Barnes, D. Dowe, A. Ng, G. Egan, “Improved quantification of cerebral vein oxygenation using partial volume correction”, Frontiers in Neuroscience, pp. Online, Feb 2017.
  49. Zheng, C. Chu, B. Ibragimov, R. Korez, T. Vrtovec, H. Hutt, R. Everson, J. Meakin, I. Lopez Andrade, B. Glocker, H. Chen, Q. Dou, P. Heng, C. Wang, D. Forsberg, A. Neubert, J. Fripp, M. Urschler, D. Stern, M. Wimmer, A. Novikov, D. Belavy, H. Cheng, G. Armbrecht, D. Felsenberg, S. Li, “Evaluation and Comparison of 3D Intervertebral Disc Localization and Segmentation Methods for 3D T2 MRI Data: A Grand Challenge”, Medical Image Analysis, vol. 35, pp. 327-344, Jan 2017.
  50. Zupanc, G. Wallis, A. Hill, R. Burgess-Limerick, S. Riek, A. Plooy, M. Horswill, M. Watson, H. De Visser, D. Conlan, D. Hewett, “Assessing colonoscopic inspection skill using a virtual withdrawal simulation: a preliminary validation of performance metrics”, BMC Medical Education, vol. 17, pp. 10, Jul 2017.

Conference Papers – 2017

Conference Papers
  1. Bourgeat, V. Villemagne, V. Dore, C. Masters, D. Ames, C. Rowe, O. Salvado, J. Fripp, “PET-Only 18F-AV1451 Tau Quantification”, ISBI 2017, Melbourne, Australia, 18-21 April 2017.
  2. Bradford, S. Berkovsky, S. Rodriguez, D. Ireland, D. Bauer, C. Gaff, “Interacting with Genomic Data: Clinician Requirements and Prototype Design”, HIC, Brisbane, August 2017.
  3. Burnham, S. Laws, G. Savage, P. Bourgeat, V. Dore, T. Porter, C. Budgeon, O. Salvado, C. Masters, C. Rowe, V. Villemagne, “Estimating the Age of Onset for Bio-Markers of AD”, ADPD17, Vienna, March 2017.
  4. Fazlollahi, S. Ayton, P. Bourgeat, P. Raniga, A. Ng, J. Fripp, D. Ames, C. Masters, C. Rowe, V. Villemagne, A. Bush, O. Salvado, “A Normalisation Framework For Quantitative Brain Imaging; Application to Quantitative Susceptibility Mapping”, International Symposium on Biomedical Imaging, Melbourne, Australia, 18-21 April 2017.
  5. Hadwen, V. Smallbon, Q. Zhang, M. D’Souza, “Energy Efficient LoRa GPS Tracker for Dementia Patients”, 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Korea, 11/7/2017.
  6. Karimi, D. Dai, A. Nguyen, H. Hassanzadeh, “Automatic Diagnosis Coding of Radiology Reports: A Comparison of Deep Learning and Conventional Classification Methods”, BioNLP, Vancouver, Canada, August 4, 2017.
  7. Koivula, L. Wee, J. Dowling, P. Greer, T. Seppala, J. Korhonen, “Intensity based synthetic CT generation method suitable for standard T2-weighted MR images obtained by different manufacturers’ MR scanners”, ESTRO 36, Vienna, 5-9 May 2017.
  8. Koopman, G. Zuccon, J. Russell, “A Task-oriented Search Engine for Evidence-based Medicine”, SIGIR, Tokyo, August 7-11, 2017.
  9. Koopman, L. Cripwell, G. Zuccon, “Generating Clinical Queries from Patient Narratives: A Comparison between Machines and Humans”, SIGIR, Tokyo, 7-11 August 2017.
  10. Mokhtari, Q. Zhang, A. Fazlollahi, “Non-wearable UWB Sensor to Detect Falls in Smart Home Environment”, PERCOM 2017, USA, March 13-17.
  11. Neubert, S. Chandra, C. Engstrom, B. Schmitt, S. Crozier, J. Fripp, “Automated assessment of knee cartilage structure using gagCEST quantitative MRI”, IEEE International Symposium on Biomedical Imaging, Melbourne, 18-21 April 2017.
  12. Neubert, S. Chandra, C. Engstrom, B. Schmitt, S. Crozier, J. Fripp, “Variations in knee cartilage structure assessment using gagCEST quantitative MRI at 3T”, ISMRM Workshop on Osteoarthritis Imaging, Sydney, 1-3 June 2017.
  13. Pagnozzi, N. Dowson, J. Doecke, A. Bradley, S. Fiori, R. Boyd, S. Rose, “Optimization of MRI-based scoring scales of brain injury severity in children with unilateral cerebral palsy”, American Academy for Cerebral Palsy and Developmental Medicine, Montreal, 13 – 16 September 2017.
  14. Scells, G. Zuccon, B. Koopman, A. Deacon, S. Geva, “A Test Collection for Evaluating Retrieval of Studies for Inclusion in Systematic Reviews”, SIGIR, Tokyo, Japan, 7-11 August 2017.
  15. Shahabi Kargar, S. Khanna, A. Sattar, J. Lind, “Improved Prediction of Procedure Duration for Elective Surgery”, HIC 2017, Brisbane, Australia, 6-9 August.
  16. Shen, J. Fripp, K. Pannek, J. George, P. Colditz, R. Boyd, S. Rose, “A Spatial-Temporal Atlas of Neonatal Diffusion MRI Based on Kernel Ridge Regression”, IEEE International Symposium on Biomedical Imaging, Melbourne, Australia, 18-21 Apr, 2017.
  17. Shen, V. Dore, S. Rose, J. Fripp, K. McMahon, G. de Zubicaray, N. Martin, P. Thompson, M. Wright, O. Salvado, “Genetic Correlation between cortical gray matter thickness and white matter connections”, MICGen – MICCAI Workshop on Imaging Genetics, Munich, Germany, 9 October 2015.
  18. Steel, “A Pseudo-Genetic Algorithm For Optimising Test Cases”, IAENG International Conference on Software Engineering 2017, Hong Kong, 15-17 March, 2017.
  19. Thong, T. Nguyen, Q. Zhang, M. Karunanithi, L. Yu, “Predicting Food Nutrition Facts Using Pocket-size Near-Infrared Sensor”, 39th Annual International Conference of the IEEE Engineering, Korea, 11/7/2017.
  20. Tran, Q. Zhang, M. Karunanithi, “Hidden Markov Models for Multi-resident Activity Recognition in Smart Homes”, IJCAI 2017 AI4IoT Workshop, Melbourne, August 2017.
  21. Villemagne, V. Dore, S. Burnham, P. Bourgeat, T. Cummins, R. Mulligan, R. Williams, O. Salvado, C. Masters, C. Rowe, “Combining categorical and continuous tau burden measures from four different tau tracers: 18F-AV1451, 18F-THK5317,18F-THK5351, and 18F-MK6420.”, SNMMI, Denver, June 2017.
  22. Villemagne, S. Burnham, P. Bourgeat, V. Dore, D. Ames, O. Salvado, R. Martins, C. Masters, C. Rowe, “Assessing the natural history of Aß-amyloid deposition with five different amyloid tracers using the Centiloid transformation”, SNMMI, Denver, June 2017.
  23. Ward, N. Ferris, P. Raniga, A. Ng, D. Barnes, D. Dowe, G. Egan, “Vein Segmentation Using Shape-Based Markov Random Fields”, International Symposium on Biomedical Imaging, Melbourne, April 18-21 2016.
  24. Ward, N. Ferris, P. Raniga, A. Ng, D. Dowe, D. Barnes, G. Egan, “Comparative anatomical vein contrast of susceptibility based MRI”, ISMRM, Honolulu Hawaii, 22-27 April.
  25. Xia, J. Manjón, C. Engstrom, S. Crozier, O. Salvado, J. Fripp, “Automated Cartilage Segmentation from 3D MR Images of Hip Joint using An Ensemble of Neural Networks”, IEEE International Symposium on Biomedical Engineering, Melbourne, Australia, 18-21 April 2017.
  26. Xiao, S. Yu, J. Vignarajan, M. Tay-Kearney, Y. Kanagasingam, “Retinal hemorrhage detection by rule-based and machine learning approach”, IEEE EMBC 2017, Jeju, Korea, 11 July 2017.
  27. Xie, N. Good, S. Khanna, J. Boyle, “Exploratory Multivariate Analysis of Hospital Admissions Data in Conjunction With Workforce Data”, The 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’17), Jeju Island, Korea, 11-15 July 2017.
  28. Yu, D. Xiao, Y. Kanagasingam, “Exudate Detection for Diabetic Retinopathy With Convolutional Neural Networks”, Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Jeju Island, Korea, 11 July 2017.
  29. Zuccon, B. Koopman, “SIGIR 2017 Tutorial on Health Search (HS2017): A Full-day from Consumers to Clinicians”, SIGIR, Tokyo, Japan, 7-11 August.

Conferences – Other

  1. Bariola, N. Good, J. Li, M. Varnfield, R. Sparks, D. Rolls, A. Reeson, R. Jayasena, “Reducing unplanned hospital re-admissions: Evaluation of alternative models of care”, HIC Conference, Brisbane, 9th August.
  2. Bauer, P. Szul, L. Wilson, R. Dunne, N. Twine, K. Lai, O. Luo, A. O’Brien, “How Apache Spark and AWS Lambda empowers researchers to identify disease causing mutations and engineer healthier genomes”, Strata Data, London, 23-25 May.
  3. Doecke, E. Whittle, B. Roberts, M. Ha, V. Baladandayuthapani, CSIRO, “Graphical network analyses informs biomarker discovery via quantification of key disease related connections”, GeneMappers, Geelong, 26-28 April 2017.
  4. Lai, L. Wilson, D. Reti, D. Bauer, “Improving predictability of CPRISPR-Cpf1 activity”, AGTA 2017 Annual Conference, Hobart, 29/10/2017 – 01/11/2017.
  5. Leroux, M. Lawley, S. Gibson, “REDCap under FHIR: Enhancing electronic data capture with FHIR capability”, Health Informatics Conference, Brisbane, QLD, Australia, August 6-9 2017.
  6. Leroux, K. Fung, I. Priebe, M. Buckley, A. Ovenden, E. Berton, K. Surinya, J. Wei, M. Thomas, J. Moore, R. Singh, A. Ruszkiewicz, L. Cosgrove, “Using Clinical Research Data to Evaluate a Blood-Based Biomarker Panel for the Detection of Colorectal Cancer”, Health Data Analytics, Brisbane, Queensland, Australia, October 11-12, 2017.
  7. Li, J. Freyne, D. Bradford, “Streamlining Surgeries: Digital Preference Card for Surgical Item Management”, HIC2017, Brisbane, 6-9 August 2017.
  8. Mehdizadeh, S. Yu, S. Frost, D. Xiao, Y. Kanagasingam, “Web-based Smart Retinal Vessel Analysis System(VASP)”, ARVO 2017, Baltimore, USA, May 7 – 11 , 2017.
  9. O’Brien, P. Szul, R. Dunne, D. Bauer, “Breaking the curse of dimensionality for machine learning on genomic data”, European Society for Human Genetics, Copenhagen, MAY 27–30, 2017.
  10. Pagnozzi, N. Dowson, J. Doecke, S. Fiori, A. Bradley, R. Boyd, S. Rose, “Classification of brain injury from structural MRI: Validation using automated approaches in children with unilateral cerebral palsy”, European Academy of Childhood Disability (EACD), Amsterdam, 17-20 May.
  11. Pannek, J. Fripp, J. George, R. Boyd, P. Colditz, S. Rose, “Automatic detection of volumes affected by subvolume movement”, International Society for Magnetic Resonance in Medicine, Honolulu, Hawaii, USA, 22-27 April 2017.
  12. Pannek, J. Fripp, J. George, R. Boyd, P. Colditz, S. Rose, “Automatic detection of volumes affected by subvolume motion in diffusion weighted imaging”, ISBI, Melbourne, 19/04/2016.
  13. Rolls, J. Boyle, S. Khanna, N. Good, “Practical considerations for using administrative data and risk stratification to reduce unplanned rehospitalisations”, HIC 2017, Brisbane, August 6-9, 2017.
  14. Smith, H. Leroux, J. Carrano, D. Gorse, P. Croll, M. Santamaria, L. Schaper, “A thematic analysis of Health Data Sharing Barriers and Information Blocking from the HISA Survey for the Productivity Commission”, Health Informatics Conference, Brisbane, QLD, August 6-9, 2017.
  15. Szul, A. O’Brien, R. Dunne, D. Bauer, “VariantSpark breaks “the curse of dimensionality” for machine learning on genomic data”, Spark Summit East, Boston, FEBRUARY 7 – 9, 2017.
  16. Villemagne, V. Dore, S. Burnham, P. Bourgeat, T. Cummins, S. Pejoska, R. Mulligan, R. Williams, J. Robertson, G. Savage, S. Laws, O. Salvado, C. Masters, C. Rowe, “Combination of continuous and categorical tau burden measures obtained with three different tau tracers: 18F-AV1451, 18F-THK5317 and 18F-THK5351.”, ADPD 2017, Vienna, Austria, 29 March – 2 April 2017.
  17. Villemagne, S. Burnham, P. Bourgeat, V. Dore, S. Rainey-Smith, S. Laws, B. Brown, P. Maruff, G. Savage, D. Ames, O. Salvado, R. Martins, C. Masters, C. Rowe, “Refining the natural history of global and regional Aβ-Amyloid deposition in sporadic Alzheimer’s disease.”, APDP 2017, Vienna, Austria, 29 March – 2 April 2017.
  18. Yu, M. Mehdizadeh, S. Frost, D. Xiao, Y. Kanagasingam, “Graph Theory Based Intelligent Retinal Vessel Analysis”, Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), USA, May 7-11, 2017.

Journal Papers – 2016

Journal Papers
  1. Armin, G. Chetty, H. De Visser, C. Dumas, F. Grimpen, O. Salvado, “Automated Visibility Map of the Internal Colon Surface from Colonoscopy Video”, International Journal of Computer Assisted Radiology and Surgery, vol. 11, pp. 1599-1610, Sep 2016.
  2. Boyd, J. Ziviani, L. Sakzewski, I. Novak, N. Badawi, K. Pannek, C. Elliott, S. Greaves, A. Guzzetta, K. Whittingham, J. Valentine, C. Morgan, M. Wallen, A. Eliasson, L. Findlay, R. Ware, S. Fiori, S. Rose, “REACH: Study protocol of a Randomised trial of Rehabilitation very Early in Congenital Hemiplegia”, BMJ Open, vol. 7, pp. e017204, Jul 2017.
  3. Brindal, G. Hendrie, J. Freyne, “Combining Persuasive Technology With Behavioral Theory to Support Weight Maintenance Through a Mobile Phone App: Protocol for the MotiMate App.”, JMIR Research Protocols, vol. 5, pp. e5, Jan 2016.
  4. Brindal, G. Hendrie, P. Taylor, J. Freyne, M. Noakes, “Cohort Analysis of a 24-Week Randomized Controlled Trial to Assess the Efficacy of a Novel, Partial Meal Replacement Program Targeting Weight Loss and Risk Factor Reduction in Overweight/Obese Adults”, Nutrients, vol. 8, pp. 265, May 2016.
  5. Buckley, P. Maruff, D. Ames, P. Bourgeat, R. Martins, C. Masters, S. Rainey-Smith, N. Lautenschlager, C. Rowe, G. Savage, V. Villemagne, K. Ellis, “Subjective memory decline predicts greater rates of clinical progression in preclinical Alzheimer’s disease”, Alzheimer’s & Dementia, vol. 12, pp. 796–804, Jul 2016.
  6. Burnham, C. Rowe, D. Baker, A. Bush, L. Cobiac, J. Doecke, K. Ellis, N. Faux, R. Head, H. Kiiveri, S. Laws, R. Martins, P. Maruff, L. Macaulay, G. Savage, D. Ames, C. Masters, W. Wilson, V. Villemagne, “Predicting Alzheimer’s disease from a blood-based biomarker profile: results from AIBL at 54 months”, Neurology, vol. 87, pp. 1093-1101, Sep 2016.
  7. Burnham, P. Bourgeat, V. Dore, O. Salvado, “The Different Clinical and Cognitive Trajectories of Healthy Older Adults with SNAP or Alzheimer’s disease pathology: A Six-year Follow-Up Study”, Lancet Neurology, vol. 15, pp. 1044-1053, Sep 2016.
  8. Caperchione, M. Duncan, G. Kolt, C. Vandelanotte, R. Rosenkranz, A. Maeder, M. Noakes, M. Karunanithi, W. Mummery, “Examining an Australian physical activity and nutrition intervention using RE-AIM”, Health Promotion International, vol. 31, pp. 450-458, Jun 2016.
  9. Chandra, J. Dowling, P. Greer, J. Martin, C. Wratten, P. Pichler, J. Fripp, S. Crozier, “Fast Automated Segmentation of Multiple Objects via Spatially Weighted Shape Learning”, Physics in Medicine and Biology, vol. 61, pp. 8070-8084, Oct 2016.
  10. Chekouo, F. Stingo, J. Doecke, K. Do, “A Bayesian integrative approach for multi-platform genomic data: A kidney cancer case study”, Biometrics, pp. Epub ahead of print, Sep 2016.
  11. Chetelat, R. Ossenkoppele, V. Villemagne, A. Perrotin, B. Landeau, F. Mézenge, W. Jagust, V. Dore, B. Miller, S. Egret, W. Seeley, W. van der Flier, R. La Joie, D. Ames, B. van Berckel, P. Scheltens, F. Barkhof, C. Rowe, C. Masters, V. de la Sayette, F. Bouwman, G. Rabinovici, “Atrophy, hypometabolism and clinical trajectories in patients with amyloid-negative Alzheimer’s disease”, Brain, vol. 139, pp. 2528-2539, Sep 2016.
  12. Doecke, Y. Wang, K. Baggerly, “Co-localized genomic regulation of miRNA and mRNA via DNA methylation affects survival in multiple tumor types”, Cancer Genetics, vol. 209, pp. 463-473, Oct 2016.
  13. Estai, Y. Kanagasingam, D. Xiao, J. Vignarajan, B. Huang, E. Kruger, M. Tennant, “A proof-of-concept evaluation of a cloud-based store-and-forward telemedicine app for screening for oral diseases”, Journal of Telemedicine and Telecare, pp. 1-7, Sep 2016.
  14. Fiori, A. Guzzetta, J. Mitra, K. Pannek, R. Pasquariello, P. Cipriani, M. Tosetti, G. Cioni, S. Rose, A. Chilosi, “Neuroanatomical Correlates of Childhood Apraxia of Speech A Connectomic Approach”, NeuroImage: Clinical, vol. 12, pp. 894-901, Nov 2016.
  15. Frost, L. Macaulay, P. Bourgeat, O. Salvado, Y. Kanagasingam, “Alzheimer’s disease and the early signs of age-related macular degeneration”, Current Alzheimer Research, vol. 13, pp. 6, Jun 2016.
  16. Frost, M. Brown, V. Stirling, J. Vignarajan, D. Prentice, Y. Kanagasingam, “Utility of ward based retinal photography in stroke patients”, Journal of Stroke and Cerebrovascular Diseases, pp. In Press, Dec 2016.
  17. Gardener, H. Sohrabi, K. Shen, S. Rainey-Smith, M. Weinborn, K. Bates, T. Shah, J. Foster, N. Lenzo, O. Salvado, C. Laske, S. Laws, K. Taddei, G. Verdile, R. Martins, “Cerebral glucose metabolism is associated with verbal but not visual memory performance in community-dwelling older adults”, Journal of Alzheimer’s Disease, vol. 52, pp. 661-672, May 2016.
  18. Ghose, J. Mitra, D. Rivest-Henault, A. Fazlollahi, P. Stanwell, P. Greer, P. Pichler, J. Fripp, J. Dowling, “MRI-alone radiation therapy planning for prostate cancer: Automatic fiducial marker detection”, Medical Physics, vol. 43, pp. 2218-2228, May 2016.
  19. Ghose, M. Ebert, J. Denham, A. Kennedy, J. Mitra, J. Dowling, “Multi-Atlas and Unsupervised Learning Approach to Pereirectal Space Segmentation in CT Images”, Australasian Physical & Engineering Sciences in Medicine, vol. 39, pp. 933–941, Nov 2016.
  20. Groves, D. Bradford, T. Burne, “Behavioural Effects of Adult Vitamin D Deficiency in BALB/c Mice are not Associated with Proliferation or Incorporation of Adult Born Hippocampal Neurons”, PLoS ONE, vol. 11, pp. 12, Apr 2016.
  21. Gu, A. Ou, X. Huang, A. Rembach, C. Fowler, P. Avula, A. Horton, J. Doecke, V. Villemagne, L. Macaulay, P. Maruff, E. Fletcher, R. Guymer, J. Wiley, C. Masters, “Altered peripheral monocyte innate phagocytosis in Alzheimer’s disease”, Acta Neuropathologica, vol. 132, pp. 377-389, Jul 2016.
  22. Gurard-Levin, L. Wilson, V. Pancaldi, S. Postel-Vinay, F. Sousa, C. Reyes, E. Marangoni, D. Gentien, A. Valencia, Y. Pommier, P. Cottu, G. Almouzni, “Chromatin regulators in the clinic as a guide for cancer treatment choice”, Molecular Cancer Therapeutics, vol. 15, pp. 1768-1777, Jul 2016.
  23. Harrington, E. Gould, Y. Lim, D. Ames, R. Pietrzak, A. Rembach, S. Rainey-Smith, R. Martins, O. Salvado, V. Villemagne, C. Rowe, C. Masters, P. Maruff, “Amyloid burden and incident depressive symptoms in cognitively normal older adults”, International Journal of Geriatric Psychiatry, pp. online, Apr 2016.
  24. Heinrich, J. Vuong, C. Hammang, A. Wu, M. Rittenbruch, J. Hogan, M. Brereton, S. O’Donoghue, “Evaluating Viewpoint Entropy for Ribbon Representation of Protein Structure”, Computer Graphics Forum, vol. 35, pp. 181-190, Jun 2016.
  25. Holmes, I. Esterlis, C. Mazure, Y. Lim, D. Ames, S. Rainey-Smith, R. Martins, O. Salvado, V. Dore, V. Villemagne, C. Rowe, S. Laws, C. Masters, P. Maruff, R. Pietrzak, “β-Amyloid, APOE and BDNF genotype, and depressive and anxiety symptoms in cognitively normal older women and men”, The American Journal of Geriatric Psychiatry, vol. 24, pp. 1191-1195, Dec 2016.
  26. Hong, D. Bauer, P. Lelliott, A. Greth, B. McMorran, S. Foote, G. Burgio, “A novel ENU-induced ankyrin-1 mutation impairs parasite invasion and increases erythrocyte clearance during malaria infection in mice”, Scientific Reports, vol. 6, pp. Article 37197, Nov 2016.
  27. Hortle, B. Nijagal, D. Bauer, L. Jensen, S. Ahn, I. Cockburn, S. Lamphin, D. Tull, M. McConville, B. McMorran, S. Foote, G. Burgio, “Adenosine monophosphate deaminase 3 activation shortens erythrocyte half-life and provides malaria resistance in mice”, Blood, vol. 128, pp. 1290-1301, Sep 2016.
  28. Hume, J. Doecke, N. Huang, E. Fowler, I. Brown, L. Simms, G. Radford-Smith, “Altered Expression of Angiotensinogen and Mediators of Angiogenesis in Ileal Crohn’s Disease”, Journal of Gastrointestinal and Liver Diseases, vol. 25, pp. 39-48, Mar 2016.
  29. Jessup, J. Crilly, J. Boyle, M. Wallis, J. Lind, D. Green, G. Fitzgerald, “Users’ experiences of an Emergency Department patient admission predictive tool: a qualitative evaluation”, Health Informatics Journal, vol. 22, pp. 618-632, Aug 2016.
  30. Khanna, D. Sier, K. Zeitz, J. Boyle, “Discharge timeliness and its impact on hospital crowding and emergency department flow performance”, Emergency Medicine Australasia, vol. 28, pp. 164-170, Apr 2016.
  31. Kholghi, L. Sitbon, G. Zuccon, A. Nguyen, “Active Learning: A Step Towards Automating Medical Concept Extraction”, JAMIA, vol. 23, pp. 289-296, Mar 2016.
  32. Koopman, G. Zuccon, P. Bruza, L. Sitbon, M. Lawley, “Information Retrieval as Semantic Inference: A Graph Inference Model applied to Medical Search”, Information Retrieval Journal, vol. 19, pp. 6-37, Apr 2016.
  33. Lai, M. D’Acunto, A. Guzzetta, P. Colditz, R. Boyd, S. Rose, J. Fripp, S. Finnigan, N. Ngenda, P. Love, K. Whittingham, K. Pannek, R. Ware, “PREMM: Preterm Early Massage by the Mother: Protocol of a randomised controlled trial of massage therapy in very preterm infants”, BMC Pediatrics, vol. 16, pp. 146, Aug 2016.
  34. Liddle, M. Burdon, D. Ireland, A. Carter, C. Knuepffer, N. Milevskiy, S. McBride, H. Chenery, W. Hall, “Balancing self-tracking and surveillance: Legal, ethical, and technological issues in using smartphones to monitor communication in people with health conditions”, Journal of Law and Medicine, pp. 387-397, Dec 2016.
  35. Lim, P. Snyder, R. Pietrzak, U. Albulene, V. Villemagne, D. Ames, O. Salvado, P. Bourgeat, R. Martins, C. Masters, C. Rowe, P. Maruff, “Sensitivity of composite scores to amyloid burden in preclinical Alzheimer’s disease: Introducing the Z-scores of Attention, Verbal fluency, and Episodic memory for Nondemented older adults composite score”, Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, vol. 2, pp. 19–26, Mar 2016.
  36. Lim, S. Laws, V. Villemagne, R. Pietrzak, T. Porter, D. Ames, C. Fowler, S. Rainey-Smith, P. Snyder, R. Martins, O. Salvado, P. Bourgeat, C. Rowe, C. Masters, P. Maruff, “Aβ-related memory decline in APOE ε4 non-carriers: Implications for Alzheimer’s disease”, Neurology, vol. 86, pp. 1635-1642, Apr 2016.
  37. Lim, V. Villemagne, S. Laws, R. Pietrzak, D. Ames, C. Fowler, S. Rainey-Smith, P. Snyder, P. Bourgeat, R. Martins, O. Salvado, C. Rowe, C. Masters, P. Maruff, “Performance on the Cogstate Brief Battery Is Related to Amyloid Levels and Hippocampal Volume in Very Mild Dementia”, Journal of Molecular Neuroscience, vol. 60, pp. 362-370, Nov 2016.
  38. Mitra, K. Shen, S. Ghose, P. Bourgeat, J. Fripp, O. Salvado, K. Pannek, J. Taylor, J. Mathias, S. Rose, “Statistical machine learning to identify mild traumatic brain injury (mTBI) patients from structural disconnections of white mater networks”, NeuroImage, vol. 129, pp. 247–259, Apr 2016.
  39. Mosadeghi-Nik, M. Askari, F. Fatehi, “Mobile health (mHealth) for headache disorders: a review of evidence base”, Journal of Telemedicine and Telecare, vol. 22, pp. 472-477, Nov 2016.
  40. Neubert, Z. Yang, C. Engstrom, Y. Xia, M. Strudwick, S. Chandra, J. Fripp, S. Crozier, “Automatic Segmentation of the Glenohumeral Cartilages from Magnetic Resonance Images”, Medical Physics, vol. 43, pp. 5370-5379, Sep 2016.
  41. Pagnozzi, K. Shen, J. Doecke, R. Boyd, A. Bradley, S. Rose, N. Dowson, “Ventricular shape as a robust surrogate marker of injury in children with cerebral palsy”, Human Brain Mapping, vol. 37, pp. 3795-3809, Jun 2016.
  42. Pagnozzi, N. Dowson, J. Doecke, S. Fiori, A. Bradley, R. Boyd, S. Rose, “Automated, quantitative measures of grey and white matter lesion burden correlates with motor and cognitive function in children with unilateral cerebral palsy”, NeuroImage: Clinical, vol. 11, pp. 751-759, Jun 2016.
  43. Pagnozzi, N. Dowson, S. Fiori, J. Doecke, A. Bradley, R. Boyd, S. Rose, “Alterations in regional shape on ipsilateral and contralateral cortex contrast in children with unilateral cerebral palsy and are predictive of multiple outcomes”, Human Brain Mapping, vol. 37, pp. 3588–3603, Oct 2016.
  44. Qi, J. Qi, Q. Zhang, “A Fast Framework for Abrupt Change Detection Based on Binary Search Trees and Kolmogorov Statistic”, Computational Intelligence and Neuroscience, vol. 2016, pp. 16, Oct 2016.
  45. Reid, R. Cunnington, R. Boyd, S. Rose, “Surface-based fMRI-driven diffusion tractography in the presence of significant brain pathology: A study linking structure and function in cerebral palsy”, PLoS ONE, vol. 11, pp. e0159540, Aug 2016.
  46. Rentz, M. Dekhtyar, J. Sherman, S. Burnham, D. Blacker, S. Aghjayan, K. Papp, R. Amariglio, A. Schembri, T. Chenhall, P. Maruff, P. Aisen, B. Hymen, R. Sperling, “The Feasibility of At-Home iPad Cognitive Testing For Use in Clinical Trials”, Journal of Prevention in AD, vol. 3, pp. 8-12, Feb 2016.
  47. Roberts, J. Doecke, A. Rembach, F. Yevenes, C. Fowler, C. McLean, M. Lind, I. Volitakis, C. Masters, A. Bush, D. Hare, t. AIBL Research Group, “Rubidium and potassium levels are altered in Alzheimer’s disease brain and blood but not in cerebrospinal fluid”, Acta Neuropathologica Communications, vol. 4, pp. 119, Nov 2016.
  48. Rowe, G. Jones, V. Dore, S. Pejoska, L. Margison, R. Mulligan, G. Chan, K. Young, V. Villemagne, “Standardized Expression of 18F-NAV4694 and 11C-PiB beta-Amyloid PET Results with the Centiloid Scale”, Journal of Nuclear Medicine, vol. 57, pp. 1233-1237, Aug 2016.
  49. Saha, D. Xiao, S. Frost, Y. Kanagasingam, “A Two-step Approach for Longitudinal Registration of Retinal Images”, Journal of Medical Systems, vol. 40, pp. Article 277, Dec 2016.
  50. Scheck, J. Fripp, L. Reid, K. Pannek, S. Fiori, R. Boyd, S. Rose, “Extent of altered white matter in unilateral and bilateral periventricular white matter lesions in children with unilateral cerebral palsy”, Research in developmental disabilities, vol. 55, pp. 368-76, Aug 2016.
  51. Shen, V. Dore, S. Rose, J. Fripp, K. McMahon, G. de Zubicaray, N. Martin, P. Thompson, M. Wright, O. Salvado, “Heritability and Genetic Correlation Between the Cerebral Cortex and Associated White Matter Connections”, Human Brain Mapping, vol. 37, pp. 2331–2347, Jun 2016.
  52. Sullivan, A. Staib, S. Khanna, N. Good, J. Boyle, R. Cattell, I. Tebbutt, L. Heiniger, B. Griffin, A. Bell, J. Lind, I. Scott, “National Emergency Access Targets (NEAT) or the Four Hour Rule: Time for an evidence-based, patient focussed target”, Medical Journal of Australia, vol. 204, pp. 354, May 2016.
  53. Taberlay, J. Achinger-Kawecka, A. Lun, F. Buske, K. Sabir, C. Gould, E. Zotenko, S. Bert, K. Giles, D. Bauer, G. Smyth, C. Stirzaker, S. O’Donoghue, S. Clark, “Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations”, Genome Research, vol. 26, pp. 719-31, Jun 2016.
  54. Talseth-Palmer, D. Bauer, W. Sjursen, T. Evans, M. McPhillips, A. Proietto, G. Otton, A. Spigelman, R. Scott, “Targeted next-generation sequencing of 22 mismatch repair genes identifies Lynch syndrome families”, Cancer Medicine, vol. 5, pp. 929-941, May 2016.
  55. Twine, L. Harkness, M. Kassem, M. Wilkins, “Transcription factor ZNF25 is associated with osteoblast differentiation of human skeletal stem cells”, BMC Genomics, vol. 17, pp. 15, Nov 2016.
  56. Varnfield, M. Karunanithi, “Translation of home-based m-Health cardiac rehabilitation in real practice”, European Medical Journal, vol. 41, pp. 63-65, Oct 2016.
  57. Walker, P. Metcalfe, G. Liney, V. Batumalai, K. Dundas, C. Glide-Hurst, G. Delaney, M. Boxer, M. Yap, J. Dowling, D. Rivest-Henault, E. Pogson, L. Holloway, “MRI geometric distortion: Impact on tangential whole breast IMRT”, Journal of Applied Clinical Medical Physics, vol. 17, pp. 7-19, Sep 2016.
  58. Wang, X. Lin, L. Wu, Q. Zhang, W. Zhang, “Shifting multi-hypergraphs via collaborative probabilistic voting”, Knowledge and Information Systems, vol. 46, pp. 515-536, Mar 2016.
  59. Whelan, G. Liney, J. Dowling, R. Rai, L. McGarvie, L. Holloway, I. Feain, R. Wilkins, M. Barton, P. Keall, “An MRI-Compatible patient rotation system – Design, construction, and first organ deformation results”, Medical Physics, vol. 44, pp. 581–588, Feb 2016.
  60. Wilson, R. Surowiec, C. Ho, B. Devitt, J. Fripp, W. Smith, U. Spiegl, G. Dornan, R. LaPrade, “Quantifiable Imaging Biomarkers for Evaluation of the Posterior Cruciate Ligament Using 3-T Magnetic Resonance Imaging A Feasibility Study”, Orthopaedic journal of sports medicine, vol. 4, pp. 2325967116639044, Apr 2016.
  61. Fay, R. Head, P. Sminia, N. Dowson, L. Cosgrove, S. Rose, J. Martin, “Valproate in adjuvant glioblastoma treatment”, Journal of Clinical Oncology, vol. 34, pp. 3105-7, Sep 2016.
  62. Ghose, R. Rai, J. Dowling, S. Arumugam, B. Schmitt, G. Liney, “The Potential Role of Ultrashort Echo Time Sequences in MRI Guided Radiotherapy”, Siemens Magnetom Flash, vol. 65, pp. 82-85, Jun 2016.

Conference Papers – 2016

Conference Papers
  1. Bell, J. Dowling, E. Pogson, P. Metcalfe, L. Holloway, “An atlas based auto-contouring technique incorporating interobserver variation”, European Society for Radiotherapy & Oncology (ESTRO) 35, Turin, Italy, 29 April-03 May, 2016.
  2. Boyle, D. Ireland, F. Webster, K. O’Sullivan, “Predicting Demand for Hospital Capacity Planning”, BHI-2016 International Conference on Biomedical and Health Informatics, Las Vegas, 24th-27th Feb 2016.
  3. Bradford, Q. Zhang, “How to Save a Life: Could Real-Time Sensor Data Have Saved Mrs L?”, CHI 2016, US, May 2016.
  4. Bradford, A. Palmer, “In Strong Hands: eHealth Support for Mental Health Carers”, CHI 2016 Workshop, San Jose, 8 May 2016.
  5. Brobowski, J. Sun, J. Dowling, L. O’Connor, P. Greer, “Assessment of distortion in MRI images for head and neck radiation therapy planning”, MR in RT, University of Michigan, June 18-19 2016.
  6. Brown, D. Silvera Tawil, P. Gemeinboeck, J. McGhee, “The Case for Conversation: A Design Research Framework for Participatory Feedback from Autistic Children”, ozCHI, Tasmania, AU, November 29.
  7. Doecke, S. Rainey-Smith, S. Bender, S. Gardener, L. Macaulay, C. Fowler, C. Masters, D. Ames, C. Rowe, R. Martins, S. Laws, “Moderate consumption of alcohol modifies the risk of Alzheimer’s disease and is associated with lower levels of cortisol”, AAIC, Toronto, July 23-30.
  8. Doecke, “Prescreening biomarkers for clinical trials: feature selection and model prediction using four well known statistical methods”, ASC, Canberra, 2-8 December.
  9. Ebert, A. Kennedy, G. Sarah, J. Dowling, S. Ghose, D. Rivest-Henault, P. Greer, L. Holloway, H. Reynolds, A. Haworth, “Development of patient-specific spatial dose-mapping from population data in prostate radiotherapy”, Mini-Micro-and Nano-Dosimetry And Innovative Technologies in Radiation Therapy, Tasmania, Jan 26-31 2016.
  10. Ebert, S. Gulliford, S. Ghose, A. Kennedy, J. Mitra, J. Dowling, J. Denham, “The perirectal space as the principal organ at risk for GI toxicity following pelvic radiotherapy”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  11. Engelke, J. Heinrich, “Visual Performance in Multidimensional Data Characterisation with Scatterplots and Parallel Coordinates”, Human Vision and Electronic Imaging, San Francisco, 14-18 February 2016.
  12. Fripp, X. Sirault, P. Kuffner, B. Furbank, G. Bull, H. Daily, C. Nguyen, “Automated plant and leaf separation: Application in 3D meshes of wheat plants”, Digital Image Computing: Techniques and Applications (DICTA), Gold Coast, 30th November – 2nd December, 2016..
  13. Ghose, J. Dowling, R. Rai, B. Schmitt, G. Liney, “Direct CT conversion from a single ultra-short echo sequence”, ISMRM 24th Annual Meeting, Singapore, 7-13th May 2016.
  14. Ghose, R. Rai, J. Dowling, S. Arumugam, B. Schmitt, G. Liney, “Preliminary results for ultra-short echo time based CT substitution for radiation therapy planning”, MR in RT, University of Michigan, June 18-19 2016.
  15. Gu, A. Ou, X. Huang, A. Rembach, C. Fowler, P. Avula, A. Horton, J. Doecke, V. Villemagne, L. Macaulay, P. Maruff, E. Fletcher, R. Guymer, J. Wiley, C. Masters, “Altered Peripheral Monocyte Innate Phagocytosis in Alzheimer’s Disease”, AAIC, Toronto, July 23-30.
  16. Gupta, T. Coles, C. Dumas, S. McBride, J. Gardner, D. Bradford, “Gamer style: Performance Factors in Gamified Simulation”, CHI 2016, California, 7-12 May 2016.
  17. Hassanzadeh, A. Nguyen, B. Koopman, “Evaluation of Medical Concept Annotation Systems on Clinical Records”, 14th Annual Workshop of The Australasian Language Technology Association, Monash University, Melbourne, 5th-7th December 2016.
  18. Hussain, L. Cripwell, S. Berkovsky, J. Freyne, “Promoting UV Exposure Awareness with Persuasive, Wearable Technologies”, Health Informatics Conference – HIC 2016, Melbourne, 25 – 27 July 2016.
  19. Ireland, R. Lamont, J. Liddle, “Classification of movement of people With Parkinsons disease using wearable inertial movement units and machine learning”, Health Informatics Conference, Melbourne, July 2016.
  20. Ireland, J. Liddle, C. Knuepffer, D. Bradford, “Hello Harlie: Enabling Speech Monitoring Through Chat-Bot Conversations”, HIC Australia Premier Health Informatics Conference, Melbourne, 25-27th July.
  21. Jameson, J. Dowling, K. Lim, J. Martin, M. Sidhom, L. Holloway, “The impact of a rectal separation device on deformable image registration accuracy: A test case for the TRAC tool using the PROMETHEUS dataset”, 18th International Conference on the use of Computers in Radiation Therapy (ICCR), London, UK, 27-30 June 2016.
  22. Jameson, J. Dowling, K. Lim, M. Berry, J. de Leon, D. Pryor, J. Martin, M. Sidhom, L. Holloway, “Automated individual case review for radiation oncology trials: The Radiotherapy Atlas Contouring Tool (TRAC) for PROMETHEUS”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  23. Jimmy, G. Zuccon, B. Koopman, “Boosting Titles does not Improve\\Retrieval Effectiveness”, ADCS, Melbourne, 6-7 December.
  24. Johnstone, J. Dowling, A. Henry, J. Wyatt, H. McCallum, C. Kelly, P. Greer, R. Speight, “Investigating the feasibility of using diagnostic MR images for MR only brain radiotherapy planning using a multi-atlas technique”, MR in RT, University of Michigan, June 18-19 2016.
  25. Kennedy, J. Dowling, S. Ghose, D. Rivest-Henault, M. Ebert, “Cluster-based selection of CT exemplars from a clinical dataset for inter-patient registration and dose mapping”, 18th International Conference on the use of Computers in Radiation Therapy (ICCR), London, UK, 27-30 June 2016.
  26. Khanna, N. Good, J. Boyle, “Predicting Unplanned Non-Routine Return to Hospital from Chronic Disease Discharges”, IEEE International Conference on Biomedical and Health Informatics (BHI 2016), Las Vegas, 24-27 Feb 2016.
  27. Khanna, J. Boyle, J. Lind, “Analytics Driven Management of Surge Events at a Hospital Service”, EEE International Conference on Biomedical and Health Informatics (BHI 2016), Las Vegas, 24-27 Feb 2016.
  28. Khanna, N. Good, J. Boyle, “Predicting Unplanned Return to Hospital from Chronic Disease Discharges”, HIC 2016, Melbourne, Australia, 25-27 July 2016.
  29. Kholghi, L. De Vine, L. Sitbon, G. Zuccon, A. Nguyen, “The Benefits of Word Embeddings Features for Active Learning in Clinical Information Extraction”, Australasian Language Technology Association Workshop (ALTA), Caulfield Campus of Monash University, Melbourne, 6th–7th December, 2016.
  30. Koopman, G. Zuccon, “A Test Collection for Matching Patients to Clinical Trials”, SIGIR, Italy, July 17 – 21.
  31. Leroux, A. Metke Jimenez, M. Lawley, “ODM on FHIR: Towards Achieving Semantic Interoperability of Clinical Data”, Semantic Web Applications and Tools for the Life Sciences (SWAT4LS), Cambridge, England, December 7-10, 2015.
  32. Li, J. Zic, N. Oakes, D. Liu, C. Wang, “Design and Evaluation of an Integrated Collaboration Platform for Secure Information Sharing”, The 13th International Conference on Cooperative Design, Visualizationa and Engineering, Sydney, 24-27 Oct 2016.
  33. Li, V. Villemagne, J. Doecke, S. Sarros, S. Varghese, C. Fowler, S. Rainey-Smith, C. Rowe, R. Martins, D. Ames, M. Horne, C. Masters, S. Collins, “Diagnostic evaluation of Alzheimer’s disease CSF biomarkers in the AIBL cohort and development of a CSF oligomeric a-synuclein assay for Parkinson’s disease”, ANS satellite meeting Neuropathology in Research, Hobart, Dec 2016.
  34. Lipani, G. Zuccon, M. Lupu, B. Koopman, A. Hanbury, “The Impact of Fixed-Cost Pooling Strategies on Test Collection Bias”, ACM SIGIR International Conference on the Theory of Information Retrieval, Delaware, USA, September 12-16, 2016.
  35. Metke Jimenez, S. Karimi, “Concept Identification and Normalisation for Adverse Drug Event Discovery in Medical Forums”, The First International Workshop on Biomedical Data Integration and Discovery, Kobe, Japan, October 17-21, 2016.
  36. Mitra, S. Ghose, P. Bourgeat, J. Fripp, J. Mathias, S. Rose, O. Salvado, “Anatomical Hubs From Spectral Clustering of Structural Connectomies”, IEEE International Symposium on Biomedical Imaging (ISBI) 2016, Prague, Czech Republic, April 13-16, 2016.
  37. Neubert, I. Naser, A. Paproki, C. Engstrom, J. Fripp, S. Crozier, S. Chandra, “Incremental Shape Learning of 3D Surfaces of the Knee, Data From the Osteoarthritis Initiative”, IEEE International Symposium on Biomedical Imaging (ISBI), Prague, Czech Republic, 13-16 April 2016.
  38. Neubert, J. Fripp, S. Chandra, C. Engstrom, S. Crozier, “Automated intervertebral disc segmentation using probabilistic shape estimation and active shape models”, 3rd MICCAI workshop on Computational Methods and Clinical Applications for Spine Imaging, Munich, Germany, 5 October 2015.
  39. Neubert, K. Wilson, C. Engstrom, R. Surowiec, A. Paproki, N. Johnson, S. Crozier, J. Fripp, C. Ho, “MRI-based bone models in the knee: an analysis of manual and automated modeling techniques”, Radiological Society of North America’s Annual Meeting, Chicago, USA, 29 Nov – 4 Dec 2015.
  40. Newstead, R. Short, J. Dowling, M. Boxer, M. Yap, K. Neville, J. Veneran, L. Holloway, “Reduction of planning margins for lung stereotactic body radiation therapy (SBRT)”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  41. Nguyen, J. Moore, J. O’Dwyer, S. Philpot, “Automated Cancer Registry Notifications: Validation of a Medical Text Analytics System for Identifying Patients with Cancer from a State-Wide Pathology Information System”, AMIA 2016 Annual Symposium, Chicago, IL, Nov 12 – 16, 2016.
  42. Rembach, J. Doecke, S. Varghese, S. Rainey-Smith, S. Sarros, L. Evered, C. Fowler, K. Pertile, R. Rumble, B. Trounson, K. Taddei, S. Laws, L. Macaulay, W. Wilson, A. Bush, K. Ellis, R. Martins, D. Ames, B. Silbert, H. Vanderstichele, C. Masters, D. Darby, Q. Li, S. Collins, “The correlation between ß-amyloid PET-imaging and cerebrospinal fluid biomarkers is affected by the assay design”, Australian Neuroscience Society Conference, Hobart, 4-7 December 2016.
  43. Roach, M. Jameson, J. Dowling, M. Ebert, P. Greer, S. Watt, L. Holloway, “Correlation between inter-observer contour variation and simulated treatment outcome within the prostate”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  44. Salvado, C. Fowler, C. Masters, D. Ames, R. Martins, V. Villemagne, C. Rowe, S. Burnham, “Cost Effective Aβ Enrichment Strategies for Recruiting a Preclinical Cohort”, AAIC 2016, Toronto, July 2016.
  45. Sun, P. Greer, P. Pichler, J. Martin, C. Wratten, L. Best, J. Dowling, “Investigation of adaptive MRI-only prostate planning”, MR in RT, University of Michigan, June 18-19 2016.
  46. Tayebikhorami, A. Metke Jimenez, A. Nguyen, G. Zuccon, “Oyster: A Tool for Fine-Grained Ontological Annotations in Free-Text”, 11th Asia Information Retrieval Societies Conference, Brisbane, Australia, 02/12/2015.
  47. Walker, P. Metcalfe, G. Liney, V. Batumalai, K. Dundas, G. Delaney, M. Boxer, M. Yap, J. Dowling, D. Rivest-Henault, E. Pogson, L. Holloway, “MRI in radiotherapy treatment planning: Geometric accuracy considerations”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  48. Whelan, G. Liney, J. Dowling, R. Rai, R. Wilkins, L. Holloway, L. McGarvie, I. Feain, M. Barton, P. Keall, “MRI-Compatible patient rotation system – Design, construction, and first use”, Engineering and Physical Sciences in Medicine, Sydney, Australia, 6-10 November 2016.
  49. Wyatt, J. Dowling, C. Kelly, J. McKenna, E. Johnstone, R. Speight, A. Henry, P. Greer, H. McCallum, “Investigating the generalizability of an atlas-based pseudo CT algorithm for prostate MR-only radiotherapy”, MR in RT, University of Michigan, June 18-19 2016.
  50. Xiao, J. Vignarajan, D. An, M. Tay-Kearney, Y. Kanagasingam, “Improvement of retinal blood vessel detection by spur removal and Gaussian matched filtering compensation”, SPIE Medical Imaging 2016, San Diego, USA, 27 Feb – 3 Mar 2016.
  51. Xiao, S. Frost, J. Vignarajan, D. An, M. Tay-Kearney, Y. Kanagasingam, “Detection and measurement of retinal blood vessel pulsatile motion”, SPIE Medical Imaging 2016, San Diego, USA, 27 Feb – 3 Mar 2016.
  52. Xiao, J. Vignarajan, T. Chen, T. Ye, N. Condon, Y. Kanagasingam, “Design and implementation of a tele-ophthalmology system for comprehensive eye examination and DR screening and its preliminary practice in Guangdong China”, ICOST 2016, Wuhan, China, 25-27 May 2016.
  53. Yin, M. Fang, G. Mokhtari, Q. Zhang, “Multi-resident Location Tracking in Smart Home Through Non-wearable Unobstrusive Sensors”, 14th International Conference On Smart homes and health Telematics, Wuhan, China, 25~27 May 2016.
  54. Yu, D. Xiao, Y. Kanagasingam, “Automatic Detection of Neovascularization on Optic Disk Region with Feature Extraction and Support Vector Machine”, International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’16), Orlando, Florida, USA, August 16-20, 2016.
  55. Zhang, M. Karunanithi, “Feasibility of Unobstrusive Ambient Sensors for Fall Detections in Home Environment”, IEEE EMBC, Florida, USA, Aug 16-20, 2016.
  56. Baker, N. Dowson, M. Fay, R. Jeffree, S. Rose, “Towards stable non-invasive estimation of Interstitial Fluid Pressure incorporating diffusion weighted data”, ISMRM, Singapore, 6 May 2016.
  57. Bauer, A. Zadoorian, N. Thorne, “Can genomic re-analysis replace laboratory testing? A case study”, eHealth Colloquium, Brisbane, 15/03/2016.
  58. Bauer, A. Zadoorian, L. Wilson, N. Thorne, “In-silico HLA genotyping from genomic sequencing data”, AGTA, Auckland, 9-12 October 2016.
  59. Bourgeat, V. Dore, D. Ames, R. Martins, C. Masters, O. Salvado, V. Villemagne, C. Rowe, “PiB PET Centiloid quantification using CapAIBL”, Alzheimer’s Association International Conference, Toronto, Canada, 24-27 July 2016.
  60. Brindal, G. Hendrie, P. Taylor, J. Freyne, M. Noakes, “Observational Results Of A 24-week Study Assessing The Efficacy Of A Novel Meal Replacement Program That Targets Weight Loss And Risk Factor Reduction In Overweight/obese Adults”, International Congress on Obesity, Vancouver, 1/05/2016.
  61. Brindal, J. Freyne, G. Hendrie, M. Noakes, “Results Of A Randomised Control Trial Evaluating A 24-week Weight Maintenance Intervention Delivered Via A Smartphone Application”, International Congress on Obesity, Vancouver, 1/05/2016.
  62. Buckley, C. Rowe, V. Dore, S. Laws, P. Bourgeat, S. Burnham, O. Salvado, P. Maruff, S. Macaulay, R. Martins, C. Masters, V. Villemagne, “Mesial Temporal Tau Burden in Older Adults with Subjective Memory Complaints Relates to Poorer Memory Function”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  63. Budgeon, K. Murray, B. Turlach, V. Villemagne, D. Baker, S. Burnham, “Reconstructing individual disease progression curves with an application to Alzheimer’s Disease”, International Biometrics Society Conference 2016, Victoria BC, July 2016.
  64. Burnham, S. Laws, G. Savage, P. Bourgeat, V. Dore, T. Porter, C. Budgeon, O. Salvado, C. Masters, C. Rowe, V. Villemagne, “Age of Onset for Markers of Alzheimer’s Disease and the Effect of APOE, BDNF, TOMM40 and Gender in the Australian Imaging, Biomarkers and Lifestyle Study”, NHMRC NNIDR 2016, Brisbane, May 2016.
  65. Burnham, P. Bourgeat, V. Dore, S. Laws, O. Salvado, G. Savage, C. Masters, C. Rowe, V. Villemagne, “The effect of Aβ deposition, neurodegeneration, APOE and their interactions on the clinical and cognitive trajectories of healthy elderly controls”, NHMRC NNIDR 2016, Brisbane, May 2016.
  66. Burnham, P. Bourgeat, V. Dore, S. Laws, O. Salvado, G. Savage, C. Masters, C. Rowe, V. Villemagne, “The effect of Aβ deposition, neurodegeneration, APOE and their interactions on the clinical and cognitive trajectories of healthy elderly controls”, ICMN 16, Seoul, May 2016.
  67. Burnham, S. Laws, G. Savage, P. Bourgeat, V. Dore, T. Porter, C. Budgeon, O. Salvado, C. Masters, C. Rowe, V. Villemagne, “Age of Onset for Markers of AD and the Effect of APOE, BDNF, TOMM40 and Gender in the Australian Imaging, Biomarkers and Lifestyle Study”, AAIC 16, Toronto, July 2016.
  68. Cai, Z. Huang, D. Srivastava, Q. Zhang, “Indexing Evolving Events from Tweet Streams”, IEEE ICDE, Helsinki, May 16, 2016.
  69. Celler, M. Varnfield, J. Li, R. Jayasena, R. Sparks, S. Nepal, S. McBride, “Results of the Australian CSIRO National Multi-site trial of at-home telemonitoring for the management of chronic disease”, eTelemed, Italy, 24/04/2016.
  70. Cespedes, J. McGree, C. Drovandi, K. Mengersen, J. Fripp, J. Doecke, “Fast and wombled approaches to detect spatial patterns of neurodegeneration consistent with progression towards Alzheimer’s disease”, 23rd Australian statistical conference 2016, Canberra, 5-8 December 2016.
  71. Cummins, A. Elias, M. Hopwood, J. Rosenfeld, V. Dore, F. Lamb, R. Williams, L. Margison, O. Salvado, C. Masters, V. Villemagne, C. Rowe, “In vivo assessment of markers of Aβ & tau pathology in Vietnam war veterans with chronic Post-Traumatic Stress Disorder”, Human Amyloid Imaging, miami, 13-15 January 2016.
  72. Cummins, A. Elias, J. Rosenfeld, V. Dore, F. Lamb, R. Williams, L. Margison, O. Salvado, C. Masters, V. Villemagne, C. Rowe, “In Vivo Assessment of Markers of Alzheimer’s Disease Pathology in Vietnam War Veterans with Chronic Post-Traumatic Stress Disorder”, AAIC 2016, Toronto, July 2016.
  73. Ding, F. Fatehi, A. Menon, A. Russell, M. Karunanithi, “User acceptance of a smartphone enhanced insulin titration program delivery for patients with type-2 diabetes”, Successes and Failures in Telehealth, SKYCITY Auckland, New Zealand, 31 Oct 2016.
  74. Doecke, T. Chekouo, S. Li, K. Do, “Multi-platform analysis of genomic data for finding predictors of cancer progression: an example using TCGA data”, CSIRO Computation and Simulation Sciences, Melbourne, March1-4.
  75. Dore, P. Bourgeat, J. Fripp, L. Macaulay, D. Ames, C. Masters, R. Martins, O. Salvado, C. Rowe, V. Villemagne, “Regional association between cortical volumes and imaging tau pathology using 18F-AV1451 and 18F-THK5351”, AAIC, Toronto, July 2016.
  76. Dore, T. Porter, P. Bourgeat, J. Fripp, S. Burnham, L. Macaulay, C. Masters, D. Ames, R. Martins, O. Salvado, C. Rowe, V. Villemagne, S. Laws, “Effects of MAPT over brain grey matter atrophy in the AIBL cohort”, AAIC, Toronto, July 2016.
  77. Elias, T. Cummins, R. Williams, V. Dore, J. Rosefeld, M. Weiner, M. Hopwood, C. Rowe, “PTSD and Risk of Alzheimer’s Disease in Vietnam Veterans: Preliminary Amyloid PET Findings from AIBL-VETS”, American Psychiatric Association Annual Meeting, Atlanta, May, 14-17, 2016.
  78. Fatehi, L. Caffery, “Telehealth service models for Australian general practices”, Successes and Failures in Telehealth, Auckland, 1-3 November 2016.
  79. Fazlollahi, P. Bourgeat, F. Meriaudeau, A. Bush, D. Ames, C. Masters, C. Rowe, V. Villemagne, O. Salvado, “Brain iron accumulation in Alzheimer’s disease evaluated using susceptibility-weighted imaging”, International Society for Magnetic Resonance in Medicine, Singapore, 07-13 May 2016.
  80. Fazlollahi, O. Salvado, A. Scott, P. Bourgeat, J. Fripp, A. Ng, P. Raniga, V. Dore, D. Ames, C. Masters, C. Rowe, V. Villemagne, A. Bush, “Iron and Amyloid depositions are positively related in non-demented individuals”, Alzheimer’s Association International conference, Toronto, Canada, 24-27 July 2016.
  81. Heyl, R. Dunne, L. Wilson, J. Ross, D. Bauer, “Predicting exon splicing changes triggered by epigenetic profiles”, AGTA, Auckland, 9-12 October 2016.
  82. Jayasena, B. Celler, R. Sparks, M. Varnfield, J. Li, S. Nepal, “Monitoring of Chronic Disease in the community: Australian Telehealth Study on Organisational Challenges and Economic Impact”, ICIC2016, Barcelona, 23/06/2016.
  83. Lim, R. Pietrzak, S. Laws, V. Villemagne, T. Porter, S. Rainey-Smith, C. Fowler, D. Ames, R. Martins, P. Bourgeat, C. Rowe, C. Masters, P. Maruff, “Age Increases Rate of Aβ and ε4 Related Memory Decline in Preclinical Alzheimer’s Disease”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  84. Lim, S. Rainey-Smith, S. Laws, V. Gupta, T. Porter, P. Bourgeat, D. Ames, C. Fowler, O. Salvado, V. Villemagne, C. Rowe, C. Masters, R. Martins, P. Maruff, “Effects of Aβ and BDNF Val66Met on Episodic Memory, Hippocampal Volume and Serum BDNF in Preclinical Alzheimer’s Disease”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  85. Manjón, P. Coupé, P. Raniga, Y. Xia, J. Fripp, O. Salvado, “HIST: HyperIntensity Segmentation Tool”, Patch-MI: 2nd International Workshop on Patch-based Techniques in Medical Imaging, Athens, Greece, October 17-21, 2016.
  86. Maruff, Y. Lim, R. Pietrzak, D. Ames, P. Bourgeat, R. Martins, O. Salvado, V. Villemagne, C. Rowe, C. Masters, “Aβ Related Memory Decline and Hippocampal Volume Loss in Mild Cognitive Impairment”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  87. Mokhtari, Q. Zhang, M. Karunanithi, “Multi-resident Identification in Smart Home Using Bluetooth Low Energy Technology”, Successes and Failures in Telehealth (SFT)-2015, Brisbane, 12-13 November.
  88. O’Brien, P. Szul, J. Ross, D. Bauer, “VariantSpark: applying Spark-based machine learning methods to genomic information”, FOAM, Melbourne, 03/03/2016.
  89. O’Brien, P. Szul, R. Dunne, D. Bauer, “Breaking the curse of dimensionality for machine learning on genomic data”, AGTA, Auckland, 9-12 October 2016.
  90. Rentz, R. Buckley, K. Sparks, M. Dekhtyar, C. Martin, J. Sherman, S. Aghjayan, S. Burnham, R. Sperling, “Computerized iPad Cognitive Testing using NIH Toolbox and Cogstate C3 For Use in Clinical Trials”, CTAD, San Diego, 8-10 December 2016.
  91. Saha, B. Fernando, D. Xiao, M. Tay-Kearney, Y. Kanagasingam, “Deep Learning for Automatic Detection and Classification of Microaneurysms, Hard and Soft Exudates, and Hemorrhages for Diabetic Retinopathy Diagnosis”, ARVO 2016, Seattle, Washington, USA, 01/05/2016.
  92. Speight, E. Goodwin, J. Lilley, E. Johnstone, S. Short, J. Dowling, D. Sebag-Montefiore, B. Al-Qaisieh, H. McCallum, J. Wyatt, C. Kelly, A. Henry, “Can brain radiotherapy treatments be planned using MRI as the primary imaging modality?”, 22nd Annual Scientific Meeting of the British Chapter of the ISMRM, Leeds, United Kingdom, 7 September 2016.
  93. Varnfield, J. Alcorn, S. Parker, M. Karunanithi, “Translation of home-based m-Health cardiac rehabilitation in real practice”, European Society of Cardiology Congress, Rome, 27-31 August 2016.
  94. Varnfield, J. Li, R. Jayasena, B. Celler, “Monitoring the chronically ill elderly in the community – User perceptions and compliance, and organisational challenges”, Rural and remote telehealth conference, Toowoomba, 5-6 October 2016.
  95. Varnfield, R. Jayasena, J. O’Dwyer, B. Celler, “Home telemonitoring for aged care – do the elderly comply and complete?”, ISQua 2016 Conference, Tokyo, 16-19 Oct 2016.
  96. Villemagne, V. Dore, P. Bourgeat, T. Cummins, R. Mulligan, O. Salvado, C. Masters, C. Rowe, “Generating continuous and categorical measures from tau imaging studies with 18F-AV1451 and 18F-THK5351: The Tau MeTeR scale”, SNMMI 2016, San Diego, California, USA, June 9-15, 2016.
  97. Villemagne, V. Dore, P. Bourgeat, T. Cummins, S. Pejoska, R. Mulligan, L. Margison, R. Williams, O. Salvado, C. Masters, C. Rowe, “The Tau Meter Scale for the Generation of Continuous and Categorical Measures of Tau Deposits in the Brain: Results from 18 F-AV1451 and 18 F-THK5351 Tau Imaging Studies”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  98. Villemagne, C. Rowe, K. Barnham, R. Cherny, M. Woodward, S. Pejoska, O. Salvado, P. Bourgeat, K. Perez, C. Fowler, A. Rembach, P. Maruff, R. Tanzi, C. Ritchie, C. Masters, “An Exploratory Molecular Imaging Study Targeting Aβ with a Novel 8-OH Quinoline in Alzheimer’s Disease (The PBT2-204 IMAGINE Study)”, AAIC 2016, Toronto, Canada, July 24-28 2016.
  99. Villemagne, S. Burnham, P. Bourgeat, V. Dore, B. Brown, S. Laws, O. Salvado, S. Rainey-Smith, P. Maruff, L. Macaulay, R. Martins, D. Ames, C. Masters, C. Rowe, “Revisiting, Revising and Refining the Natural History of Aβ Deposition and Its Effects on Neurodegeneration and Cognitive Decline in Sporadic Alzheimer’s Disease”, AAIC 16, Toronto, July 2016.
  100. Wilson, C. Cowled, B. Dalrymple, M. Tizard, T. Doran, D. Bauer, “Computationally guided genome engineering: Current best practice and outlook”, Synthetic Biology cutting edge science symposium, Canberra, 4/5 April 2016.
  101. Wilson, A. O’Brien, R. Dunne, D. Bauer, “Cloud-based CRISPR target site ranking using Chromatin information”, ComBio, Brisbane, 3 – 7 October 2016.
  102. Wilson, A. O’Brien, O. Luo, R. Dunne, D. Bauer, “Chromatin-aware cloud­based CRISPR target site predictor”, AGTA, Auckland, 9-12 October 2016.
  103. Wyatt, J. Dowling, C. Kelly, J. McKenna, E. Johnstone, R. Speight, A. Henry, P. Greer, H. McCallum, “Can an atlas-based synthetic-CT algorithm for the prostate facilitate the generalisation of MR-only radiotherapy to other centres and MR scanners?”, 22nd Annual Scientific Meeting of the British Chapter of the ISMRM, Leeds, United Kingdom, 7-9 September 2016.
  104. van Havre, J. Doecke, V. Villemagne, “Investigating the early development of Alzheimer’s Disease using overfitted Bayesian mixture models: simple tools for complex problems.”, WOMBAT: Making Data Analysis Easier, Melbourne Zoo, Melbourne, Victoria Australia, 18/02/16 – 19/02/16.

Journal Papers – 2015

Journal Papers
  1. Baker, N. Dowson, S. Rose, P. Thomas, “Modelling FDG metabolism in liver voxels”, Journal of Theoretical Biology, vol. 365, pp. 390–402, Jan 2015.
  2. Bauer, B. McMorran, S. Foote, G. Burgio, “Genome-wide analysis of chemically induced mutations in mouse in phenotype-driven screens”, BMC Genomics, vol. 16, pp. 866, Oct 2015.
  3. Bell, N. Dowson, M. Fay, P. Thomas, S. Puttick, Y. Gal, S. Rose, “Hypoxia imaging in gliomas with 18F-Fluoroisonidazole PET: Towards clinical translation”, Seminars in Nuclear Medicine, vol. 45, pp. 136-150, Feb 2015.
  4. Bell, N. Dowson, S. Puttick, Y. Gal, P. Thomas, M. Fay, J. Smith, S. Rose, “Increasing feasibility and utility of 18F-FDOPA PET for the management of glioma”, Nuclear Medicine and Biology, vol. 42, pp. 788-795, Oct 2015.
  5. Berkovsky, J. Freyne, “Personalized Social Network Activity Feeds for Increased Interaction and Content Contribution”, Frontiers in Robotics and AI, vol. 2, pp. -, Nov 2015.
  6. Bourgeat, V. Villemagne, V. Dore, B. Brown, L. Macaulay, R. Martins, C. Masters, D. Ames, K. Ellis, C. Rowe, O. Salvado, J. Fripp, “Comparison of MR-less PiB SUVR quantification methods”, Neurobiology of Aging, vol. 36, pp. S159–S166, Jan 2015.
  7. Burnham, N. Raghavan, W. Wilson, D. Baker, M. Ropacki, G. Novak, D. Ames, K. Ellis, R. Martins, P. Maruff, C. Masters, G. Romano, C. Rowe, G. Savage, R. Twyman, L. Macaulay, V. Narayan, the AIBL Research Group, “Novel Statistically-Derived Composite Measures for Assessing the Efficacy of Disease-Modifying Therapies in Prodromal AD Trials: An AIBL Study”, Journal of Alzheimer’s Disease, vol. 46, pp. 1079-1089, Jun 2015.
  8. Cai, Z. Huang, D. Srivastava, Q. Zhang, “Indexing Evolving Events from Tweet Streams”, IEEE Transactions on Knowledge and Data Engineering, vol. 27, pp. 3001-3015, Nov 2015.
  9. Caperchione, M. Duncan, G. Kolt, C. Vandelanotte, R. Rosenkranz, A. Maeder, M. Noakes, M. Karunanithi, K. Mummery, “Examining an Australian physical activity and nutrition intervention using RE-AIM”, Health Promotion International, pp. 1-9, Feb 2015.
  10. Carey, S. Crewther, O. Salvado, T. Lindén, A. Connelly, W. Wilson, D. Howells, L. Churilov, H. Ma, T. Tse, S. Rose, S. Palmer, P. Bourgeat, B. Campbell, S. Christensen, L. Macaulay, J. Favaloro, V. O’Collins, S. McBride, S. Bates, E. Cowley, H. Dewey, T. Wijeratne, R. Gerraty, T. Phan, B. Yan, M. Parsons, C. Bladin, A. Barber, S. Read, A. Wong, A. Lee, T. Kleinig, G. Hankey, D. Blacker, R. Markus, J. Leyden, M. Krause, R. Grimley, N. Mahant, J. Jannes, J. Sturm, S. Davis, G. Donnan, The START Research Team, “STroke imAging pRevention and treatment (START): A longitudinal stroke cohort study: Clinical trials protocol”, International Journal of Stroke, vol. 10, pp. 636-644, Jun 2015.
  11. Cash, C. Frost, L. Iheme, D. Ünay, M. Kandemirf, J. Fripp, O. Salvado, P. Bourgeat, M. Reuter, B. Fischl, M. Lorenzi, G. Frisoni, X. Pennec, R. Pierson, J. Gunter, M. Senjem, C. Jack, N. Guizard, V. Fonov, L. Collins, M. Modat, J. Cardoso, K. Leung, H. Wang, S. Das, P. Yushkevich, I. Malone, N. Fox, J. Schott, S. Ourselin, “Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge”, Neuroimage, vol. 123, pp. 149-164, Dec 2015.
  12. Chatterjee, V. Gupta, A. Fagan, M. Jasielec, C. Xiong, H. Sohrabi, S. Dhaliwal, K. Taddei, P. Bourgeat, B. Brown, T. Benzinger, R. Bateman, J. Morris, R. Martins, “Decreased platelet APP isoform ratios in autosomal dominant Alzheimer’s disease: Baseline data from a DIAN cohort subset”, Current Alzheimer Research, vol. 12, pp. 157-164, Feb 2015.
  13. Chekouo, F. Stingo, J. Doecke, K. Do, “miRNA-target gene regulatory networks: A Bayesian integrative approach to biomarker selection with application to kidney cancer”, Biometrics, vol. 71, pp. 428-438, Jun 2015.
  14. Cheng, J. Doecke, R. Sharples, V. Villemagne, C. Fowler, A. Rembach, R. Martins, C. Rowe, L. Macaulay, C. Masters, A. Hill, “Prognostic serum miRNA biomarkers associated with Alzheimer’s disease shows concordance with neuropsychological and neuroimaging assessment”, Molecular Psychiatry, vol. 20, pp. 1188-1196, Oct 2015.
  15. Crilly, J. Boyle, M. Jessup, M. Wallis, J. Lind, D. Green, G. Fitzgerald, “The Implementation and Evaluation of the Patient Admission Prediction Tool: Assessing Its Impact on Decision-Making Strategies and Patient Flow Outcomes in 2 Australian Hospitals”, Quality Management in Health Care, vol. 24, pp. 169-176, Oct 2015.
  16. Devine, K. Pannek, A. Coulthard, P. McCombe, S. Rose, R. Henderson, “Exposing asymmetric gray matter vulnerability in amyotrophic lateral sclerosis”, NeuroImage: Clinical, vol. 7, pp. 782-787, Mar 2015.
  17. Devine, K. Pannek, A. Coulthard, P. McCombe, R. Henderson, S. Rose, “Exposing asymmetric gray matter vulnerability in amyotrophic lateral sclerosis”, NeuroImage: Clinical, vol. 7, pp. 782-787, Dec 2015.
  18. Doecke, L. Simms, Z. Zhao, R. Roberts, E. Fowler, A. Croft, A. Lin, N. Huang, D. Whiteman, T. Florin, M. Barclay, T. Merriman, R. Gearry, G. Montgomery, G. Radford-Smith, “Smoking behaviour modifies IL23r-associated disease risk in patients with Crohn’s disease”, Journal of Gastroenterology and Hepatology, vol. 30, pp. 299-307, Feb 2015.
  19. Dowling, J. Sun, P. Pichler, D. Rivest-Henault, S. Ghose, H. Richardson, C. Wratten, J. Martin, J. Arm, L. Best, S. Chandra, J. Fripp, F. Menk, P. Greer, “Automatic Substitute Computed Tomography Generation and Contouring for Magnetic Resonance Imaging (MRI)-Alone External Beam Radiation Therapy From Standard MRI Sequences”, International Journal of Radiation Oncology Biology Physics, vol. 93, pp. 1144–1153, Nov 2015.
  20. Fazlollahi, P. Bourgeat, X. Liang, F. Meriaudeau, A. Connelly, O. Salvado, F. Calamante, “Reproducibility of multiphase pseudo-continuous arterial spin labeling and the effect of post-processing analysis methods”, Neuroimage, vol. 117, pp. 191-201, Aug 2015.
  21. Fazlollahi, F. Meriaudeau, L. Giancardo, V. Villemagne, C. Rowe, P. Yates, O. Salvado, P. Bourgeat, “Computer-aided detection of cerebral microbleeds in susceptibility-weighted imaging”, Computerized Medical Imaging and Graphics, vol. 46, pp. 269-276, Dec 2015.
  22. Fifita, K. Williams, E. McCann, A. O’Brien, D. Bauer, G. Nicholson, I. Blair, “Mutation analysis of Matrin 3 in Australian familial amyotrophic lateral sclerosis”, Neurobiology of Aging, vol. 36, pp. 1602.e1–1602.e2, Mar 2015.
  23. Fiori, K. Pannek, R. Pasquariello, R. Ware, G. Cioni, S. Rose, R. Boyd, A. Guzzetta, “Corticopontocerebellar Connectivity Disruption in Congenital Hemiplegia”, Neurorehabilitation and Neural Repair, vol. 29, pp. 1-9, Jan 2015.
  24. Fiori, M. Staudt, K. Pannek, D. Borghetti, L. Biagi, D. Scelfo, S. Rose, M. Tosetti, G. Cioni, A. Guzzetta, “Is one motor cortex enough for two hands?”, Developmental Medicine & Child Neurology, vol. 57, pp. 1-4, Jun 2015.
  25. Fiori, G. Cioni, A. Guzzetta, K. Pannek, R. Ware, G. Rossi, K. Klingels, H. Feys, A. Coulthard, S. Rose, R. Boyd, “Validity of semi-quantitative scale for brain MRI in unilateral cerebral palsy due to periventricular white matter lesions: Relationship with hand sensorimotor function and structural connectivity”, NeuroImage: Clinical, vol. 8, pp. 104-109, Dec 2015.
  26. George, R. Boyd, P. Colditz, S. Rose, K. Pannek, J. Fripp, B. Lingwood, M. Lai, A. Kong, R. Ware, A. Coulthard, C. Finn, S. Bandaranayake, “PPREMO: A prospective cohort study of preterm infant brain structure and function to predict neurodevelopmental outcome”, BMC Pediatrics, vol. 15, pp. 1-17, Sep 2015.
  27. Ghose, L. Holloway, K. Lim, P. Chan, J. Veera, S. Vinod, G. Liney, P. Greer, J. Dowling, “A review of segmentation and deformable registration methods applied to adaptive cervical cancer radiation therapy treatment planning”, Artificial Intelligence in Medicine, vol. 64, pp. 75-87, Jun 2015.
  28. Good, F. Macrae, G. Young, J. O’Dwyer, M. Slattery, B. Venables, T. Lockett, M. O’Dwyer, “Optimal colonoscopic surveillance intervals to reduce incidence of advanced adenoma and colorectal cancer”, Journal of Gastroenterology and Hepatology, vol. 30, pp. 1147-1154, Jul 2015.
  29. Good, J. Taylor, K. Suresh, F. Macrae, G. Young, T. Lockett, “A prediction model for colon cancer surveillance data”, Statistics in Medicine, vol. 34, pp. 2662-2675, Aug 2015.
  30. Greer, J. Dowling, P. Pichler, J. Sun, H. Richardson, D. Rivest-Henault, S. Ghose, J. Martin, C. Wratten, J. Arm, L. Best, J. Denham, P. Lau, “Development of MR-only planning for prostate radiation therapy using synthetic CT”, Siemens Magnetom Flash, vol. 2015, pp. 70-73, May 2015.
  31. Gupta, A. Wilson, S. Burnham, E. Hone, S. Pedrini, S. Laws, F. Lim, A. Rembach, S. Rainey-Smith, D. Ames, L. Cobiac, L. Macaulay, C. Masters, C. Rowe, A. Bush, R. Martins, “Follow-up plasma apolipoprotein E levels in the Australian Imaging, Biomarkers and Lifestyle Flagship Study of Ageing (AIBL) cohort”, Alzheimer’s Research & Therapy, vol. 7, pp. 9 p., Feb 2015.
  32. Gupta, J. Doecke, E. Hone, S. Pedrini, S. Laws, M. Thambisetty, A. Bush, C. Rowe, V. Villemagne, D. Ames, C. Masters, L. Macaulay, A. Rembach, S. Rainey-Smith, R. Martins, “Plasma apolipoprotein J as a potential biomarker for Alzheimer’s disease: Australian Imaging, Biomarkers and Lifestyle study of aging”, Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, vol. 3, pp. 18-26, Dec 2015.
  33. Hassanzadeh, T. Groza, A. Nguyen, J. Hunter, “A supervised approach to quantifying sentence similarity with application to Evidence Based Medicine”, PLoS ONE, vol. 10, pp. e0129392, Jun 2015.
  34. Hosein, Y. Lim, B. Day, B. Stringer, S. Rose, R. Head, L. Cosgrove, P. Sminia, M. Fay, J. Martin, I. Priebe, “The effect of valproic acid in combination with irradiation and temozolomide on primary human glioblastoma cells”, Journal of Neuro-Oncology, vol. 122, pp. 263-271, Feb 2015.
  35. Ireland, S. McBride, C. Knuepffer, “Adaptive Multi-rate Compression Effects on Vowel Analysis”, Frontiers in Bioengineering and Biotechnology, vol. 3, pp. 9, Aug 2015.
  36. Karimi, A. Metke Jimenez, M. Kemp, C. Wang, “CADEC: A Corpus of Adverse Drug Event Annotations”, Journal of Biomedical Informatics, vol. 55, pp. 73–81, Mar 2015.
  37. Karimi, C. Wang, A. Metke Jimenez, R. Gaire, C. Paris, B. Harvey, “Text and Data Mining Techniques in Adverse Drug Reaction Detection”, ACM Computing Surveys, vol. 47, pp. Article 56, May 2015.
  38. Kerbler, Z. Nedelska, J. Fripp, J. Laczó, M. Vyhnale, J. Lisý, A. Hamlin, S. Rose, J. Hort, E. Coulson, “Basal Forebrain Atrophy Contributes to Allocentric Navigation Impairment in Alzheimer’s Disease Patients.”, Frontiers in Aging Neuroscience, vol. 7, pp. 1-11, Sep 2015.
  39. Kerestes, P. Phal, C. Steward, B. Moffat, S. Salinas, K. Cox, K. Ellis, E. Cyarto, D. Ames, R. Martins, C. Masters, C. Rowe, M. Sharman, O. Salvado, C. Szoeke, M. Lai, N. Lautenschlager, P. Desmond, “Alterations in dorsal and ventral posterior cingulate connectivity in APOE ε4 carriers at risk of Alzheimer’s disease”, British Journal of Psychiatry, vol. 1, pp. 139-148, Nov 2015.
  40. Kerr, D. Grice, C. Tran, D. Bauer, D. Li, P. Hendry, G. Hannan, “Early life events influence whole-of-life metabolic health via gut microflora and gut permeability”, Critical Reviews in Microbiology, vol. 41, pp. 326-340, Jul 2015.
  41. Koopman, S. Karimi, D. Truran, M. Kemp, R. McGuire, A. Nguyen, D. Muscatello, “Automatic Classification of Diseases from Free-text Death Certificates for Real-time Surveillance”, BMC Medical Informatics and Decision Making, vol. 15, pp. 1-1, Jul 2015.
  42. Koopman, G. Zuccon, A. Nguyen, A. Bergheim, N. Grayson, “Automatic ICD-10 Classification of Cancers from Free-text Death Certificates”, Journal of Medical Informatics, vol. 84, pp. 956–965, Nov 2015.
  43. Li, V. Villemagne, J. Doecke, A. Rembach, S. Sarros, S. Varghese, A. McGlade, K. Laughton, K. Pertile, C. Fowler, R. Rumble, B. Trounson, K. Taddei, S. Rainey-Smith, S. Laws, J. Robertson, L. Evered, B. Silbert, K. Ellis, C. Rowe, L. Macaulay, D. Darby, R. Martins, D. Ames, C. Masters, S. Collins, “Alzheimer’s Disease Normative Cerebrospinal Fluid Biomarkers Validated in PET Amyloid-β Characterized Subjects from the Australian Imaging, Biomarkers and Lifestyle (AIBL) study”, Journal of Alzheimer’s Disease, vol. 48, pp. 175-187, Aug 2015.
  44. Lim, R. Pietrzak, P. Bourgeat, D. Ames, K. Ellis, A. Rembach, K. Harrington, O. Salvado, R. Martins, P. Snyder, C. Masters, C. Rowe, V. Villemagne, P. Maruff, “Relationships Between Performance on the Cogstate Brief Battery, Neurodegeneration, and Ab Accumulation in Cognitively Normal Older Adults and Adults with MCI”, Archives of Clinical Neuropsychology, vol. 30, pp. 49-58, Feb 2015.
  45. Ma, C. Stolte, J. Krycer, D. James, S. O’Donoghue, “SnapShot: Insulin/IGF1 Signaling”, Cell, vol. 161, pp. 948–948.e1, May 2015.
  46. Nepal, C. Paris, P. Aghaei Pour, J. Freyne, S. Bista, “Interaction Based Recommendations for Online Communities “, ACM Transactions on Internet Technology (TOIT), vol. 15, pp. 21, Jun 2015.
  47. Neubert, J. Fripp, C. Engstrom, D. Schwarz, M. Weber, S. Crozier, “Statistical shape model reconstruction with sparse anomalous deformations: application to intervertebral disc herniation”, Computerized Medical Imaging and Graphics, vol. 46, pp. 11-19, Dec 2015.
  48. Nguyen, F. Bashirzadeh, J. Hundloe, O. Salvado, N. Dowson, R. Ware, I. Masters, A. Kumar, D. Fielding, “Grey scale texture analysis of endobronchial ultrasound mini probe images for prediction of benign or malignant aetiology”, Respirology, vol. 20, pp. 960-966, Aug 2015.
  49. O’Brien, N. Saunders, Y. Guo, F. Buske, R. Scott, D. Bauer, “VariantSpark: Population Scale Clustering of Genotype Information”, BMC Genomics, vol. 16, pp. 1, Dec 2015.
  50. O’Donoghue, K. Sabir, M. Kalemanov, C. Stolte, B. Wellmann, V. Ho, M. Roos, N. Perdigao, F. Buske, J. Heinrich, B. Rost, A. Schafferhans, “Aquaria: Simplifying discovery and insight from protein structures”, Nature Methods, vol. 12, pp. 98-99, Jan 2015.
  51. Oughton, S. Rose, G. Galloway, S. Khoo, S. O’Neill, A. Coulthard, “Carotid ultrasound pulsatility indices and cardiovascular risk in Australian women”, Journal of Medical Imaging and Radiation Oncology, vol. 59, pp. 20-25, Feb 2015.
  52. Pagnozzi, S. Fiori, R. Boyd, A. Guzzetta, J. Doecke, S. Rose, Y. Gal, N. Dowson, “Optimization of MRI-based scoring scales of brain injury severity in children with unilateral cerebral palsy”, Paediatric Radiology, vol. 45, pp. 1-10, Nov 2015.
  53. Pagnozzi, G. Yaniv, R. Boyd, S. Fiori, S. Rose, N. Dowson, “The need for improved brain lesion segmentation techniques for children with cerebral palsy: a review”, International Journal of Developmental Neuroscience, vol. 47, pp. 229-246, Dec 2015.
  54. Pang, J. Driban, T. McAlindon, J. Tamez-Pena, J. Fripp, E. Miller, “On the use of directional edge information and coupled shape priors for segmentation of magnetic resonance images of the knee”, IEEE journal of Biomedical and Health Informatics, vol. 15, pp. 1153-67, May 2015.
  55. Perdigao, J. Heinrich, C. Stolte, K. Sabir, M. Buckley, B. Tabor, B. Signal, B. Gloss, C. Hammang, B. Rost, A. Schafferhans, S. O’Donoghue, “Unexpected features of the dark proteome”, Proceedings of the National Academy of Sciences of the United States of America, vol. 112, pp. 15898–15903, Dec 2015.
  56. Puttick, C. Bell, N. Dowson, S. Rose, M. Fay, “PET, MRI, and simultaneous PET/MRI in the development of diagnostic and therapeutic strategies for glioma”, Drug Discovery Today, vol. 20, pp. 306-317, Mar 2015.
  57. Puttick, B. Stringer, B. Day, Z. Bruce, K. Ensbey, K. Mardon, G. Cowin, K. Thurecht, A. Whittaker, M. Fay, A. Boyd, S. Rose, “EphA2 as a Diagnostic Imaging Target in Glioblastoma: A Positron Emission Tomography/Magnetic Resonance Imaging Study.”, Molecular Imaging, vol. 14, pp. 8-28, Jul 2015.
  58. Raffelt, R. Smith, G. Ridgway, J. Tournier, D. Vaughan, S. Rose, R. Henderson, A. Connelly, “Connectivity-Based Fixel Enhancement: Whole-Brain Statistical Analysis of Diffusion MRI Measures in the Presence of Crossing Fibres”, NeuroImage, vol. 117, pp. 40-55, May 2015.
  59. Reid, S. Rose, R. Boyd, “Rehabilitation and neuroplasticity in children with unilateral cerebral palsy”, Nature Reviews Neurology, vol. 11, pp. 390-400, Jun 2015.
  60. Reid, R. Boyd, R. Cunnington, S. Rose, “Interpreting intervention induced neuroplasticity with fMRI: the case for multimodal imaging strategies”, Neuroplasticity, vol. 501, pp. 139453, Oct 2015.
  61. Rembach, F. Stingo, C. Peterson, M. Vanucci, K. Do, W. Wilson, L. Macaulay, T. Ryan, R. Martins, D. Ames, C. Masters, J. Doecke, “Bayesian graphical network analyses reveals complex biological interactions specific to Alzheimer’s Disease.”, Journal of Alzheimer’s Disease, vol. 44, pp. 917-25, Jan 2015.
  62. Rembach, L. Evered, Q. Li, T. Nash, L. Vidaurre, C. Fowler, K. Pertile, R. Rumble, B. Trounson, S. Maher, F. Mooney, M. Farrow, K. Taddei, S. Rainey-Smith, S. Laws, L. Macaulay, W. Wilson, D. Darby, R. Martins, D. Ames, S. Collins, B. Silbert, C. Masters, J. Doecke, “Alzheimer’s Disease cerebrospinal fluid biomarkers are not influenced by gravity drip or aspiration extraction methodology”, Alzheimer’s Research & Therapy, vol. 7, pp. Article 71, Dec 2015.
  63. Rivest-Henault, N. Dowson, P. Greer, J. Fripp, J. Dowling, “Robust inverse-consistent affine registration for the construction of multimodal CT-MR atlases in radiation therapy”, Medical Image Analysis, vol. 23, pp. 56-69, Jul 2015.
  64. Sadedin, H. Dashnow, P. James, M. Bahlo, D. Bauer, A. Lonie, S. Lunke, I. Macciocca, J. Ross, K. Siemering, Z. Stark, S. White, G. Taylor, C. Gaff, A. Oshlack, N. Thorne, “Cpipe: a shared variant detection pipeline designed for diagnostic settings”, Genome Medicine, vol. 7, pp. Article 68, Jul 2015.
  65. Sahama, K. Sinclair, S. Fiori, J. Doecke, K. Pannek, L. Reid, M. Lavin, S. Rose, “Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study”, Neuroimage: Clinical, vol. 9, pp. 206-215, Dec 2015.
  66. Sakzewski, L. Miller, J. Ziviani, D. Abbott, S. Rose, R. Macdonell, R. Boyd, “Randomized comparison trial of density and context of upper limb intensive group versus individualized occupational therapy for children with unilateral cerebral palsy”, Developmental Medicine & Child Neurology, vol. 57, pp. 539-547, Jun 2015.
  67. Santos, K. Tsafou, S. Pletscher-Frankild, C. Stolte, S. O’Donoghue, L. Jensen, “Comprehensive comparison of large-scale tissue expression datasets”, PeerJ, vol. 3, pp. e1054, Jun 2015.
  68. Scheck, K. Pannek, D. Raffelt, S. Fiori, R. Boyd, S. Rose, “Structural connectivity of the Anterior Cingulate in children with unilateral Cerebral Palsy due to white matter lesions”, NeuroImage: Clinical, vol. 9, pp. 498-505, Dec 2015.
  69. Soldatos, N. Perdigao, N. Brown, K. Sabir, S. O’Donoghue, “How to learn about gene function: text-mining or ontologies?”, Methods, vol. 74, pp. 3-15, Mar 2015.
  70. Stolte, K. Sabir, J. Heinrich, C. Hammang, A. Schafferhans, S. O’Donoghue, “Integrated visual analysis of protein structures, sequences, and feature data”, BMC Bioinformatics, vol. 16, pp. S7, Aug 2015.
  71. Su, A. Savkin, Y. Guo, B. Celler, H. Nguyen, “Decentralized Integral Controllability Analysis Based on a New Unconditional Stability Criterion”, IEEE Transactions on Automatic Control, vol. 60, pp. 211 – 215, Jan 2015.
  72. Sun, J. Dowling, P. Pichler, F. Menk, D. Rivest-Henault, J. Lambert, J. Parker, J. Arm, L. Best, J. Martin, J. Denham, P. Greer, “MRI Simulation: End-to-end testing for prostate radiation therapy using geometric pelvic MRI phantoms”, Physics in Medicine and Biology, vol. 60, pp. 3097-3109, Mar 2015.
  73. Sun, J. Dowling, P. Pichler, J. Parker, J. Martin, P. Stanwell, J. Arm, F. Menk, P. Greer, “Investigation on the performance of dedicated radiotherapy positioning devices for MR scanning for prostate planning”, Journal of Applied Clinical Medical Physics, vol. 16, pp. 4-13, Apr 2015.
  74. Sun, M. Barnes, J. Dowling, P. Stanwell, F. Menk, P. Greer, “An open source automatic quality assurance (OSAQA) tool for the ACR MRI phantom.”, Australasian Physical & Engineering Sciences in Medicine, vol. 38, pp. 39-46, Jun 2015.
  75. Tran, D. Grice, B. Wade, C. Kerr, D. Bauer, D. Li, G. Hannan, “Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid”, Future Microbiology, vol. 10, pp. 1339-53, Aug 2015.
  76. Tsao, K. Pannek, R. Boyd, S. Rose, “Changes in the integrity of thalamocortical connections are associated with sensorimotor deficits in children with congenital hemiplegia”, Brain Structure Function, vol. 220, pp. 307-318, Jan 2015.
  77. Vandewater, L. Macaulay, W. Wilson, P. Zhang, “An Adaptive Genetic Algorithm for Selection of Blood-based Protein Biomarkers for Alzheimer’s Disease Progression Prediction”, BMC Bioinformatics, pp. S1 1-10, Sep 2015.
  78. Varnfield, M. Karunanithi, “Information and communication technology-based cardiac rehabilitation homecare programs”, Smart Homecare Technology and Telehealth, pp. 69-79, Apr 2015.
  79. Voyle, D. Baker, S. Burnham, A. Covin, C. Tan Hehir, C. Bazenet, S. Lovestone, S. Kiddle, R. Dobson, “Blood protein markers of Neocortical Amyloid Burden: A candidate study using SOMAscan technology”, Journal of Alzheimer’s Disease, vol. 46, pp. 947-961, Jul 2015.
  80. Walker, G. Liney, L. Holloway, J. Dowling, D. Rivest-Henault, P. Metcalfe, “Continuous table acquisition MRI for radiotherapy treatment planning: distortion assessment with a new 3D volumetric phantom”, Medical Physics, vol. 42, pp. 1982-1992, Mar 2015.
  81. Wang, X. Lin, L. Wu, W. Zhang, X. Huang, Q. Zhang, “Robust Subspace Clustering for Multi-view Data by Exploiting Correlation Consensus”, IEEE Transactions on Image Processing, vol. 24, pp. 3939-3949, Nov 2015.
  82. Whelan, S. Kumar, J. Dowling, J. Begg, J. Lambert, K. Lim, S. Vinod, P. Greer, L. Holloway, “Utilising pseudo-CT data for dose calculation and plan optimization in adaptive radiotherapy”, Australasian Physical & Engineering Sciences in Medicine, vol. 38, pp. 561-568, Dec 2015.
  83. Winter, C. Bell, T. Whyte, J. Cardinal, D. McFarlane, S. Rose, “Blood-Brain Barrier dysfunction following Traumatic Brain Injury: correlation of Ktrans (DCE-MRI) and SUVR (99mTc-DTPA SPECT) but not serum S100B.”, Neurology Research, vol. 37, pp. 599-606, Jul 2015.
  84. Xia, J. Fripp, S. Chandra, D. Walker, S. Crozier, C. Engstrom, “Automated 3D quantitative assessment and measurement of alpha angles from the femoral head-neck junction using MR imaging”, Physics in Medicine and Biology, vol. 60, pp. 7601-16, Sep 2015.
  85. Xue, M. Doellinger, J. Fripp, C. Ho, R. Surowiec, R. Schwarz, “Automatic model-based semantic registration of multimodal MRI knee data”, Journal of Magnetic Resonance Imaging, vol. 41, pp. 633-644, Mar 2015.
  86. Yang, J. Fripp, S. Chandra, A. Neubert, Y. Xia, M. Strudwick, A. Paproki, C. Engstrom, S. Crozier, “Automatic bone segmentation and bone-cartilage interface extraction for the shoulder joint from magnetic resonance images”, Physics in Medicine and Biology, vol. 60, pp. 1441-1459, Jan 2015.
  87. Zuccon, S. Khanna, A. Nguyen, J. Boyle, M. Hamlet, M. Cameron, “Automatic Detection of Tweets Reporting Cases of Influenza like Illnesses in Australia”, Health Information Science and Systems, vol. 3, pp. 1-10, Feb 2015.
  88. Zwan, V. Villemagne, V. Dore, R. Buckley, P. Bourgeat, R. Veljanoski, O. Salvado, R. Williams, L. Margison, A. Rembach, L. Macaulay, R. Martins, D. Ames, W. van der Flier, K. Ellis, P. Scheltens, C. Masters, C. Rowe, “Subjective memory complaints in healthy ApoE ε4 carriers are associated with higher Aβ burden: Results from the 18F-flutemetamol and 11C-PiB AIBL cohorts”, Journal of Alzheimer’s Disease, vol. 49, pp. 1115-1122, Nov 2015.
  89. Dowson, B. Thurston, P. Cowled, M. Boult, R. Fitridge, “Independence of Extent of Tortuosity and Calcification in Iliac Arteries”, Journal of Vascular Surgery, vol. 62, pp. 537-538, Aug 2015.
  90. Heinrich, D. Weiskopf, “Parallel Coordinates for Multidimensional Data Visualization: Basic Concepts”, Computing in Science and Engineering, vol. 17, pp. 70-76, Apr 2015.
  91. Thomas, N. Dowson, C. Baker, J. Smith, S. Rose, “Optimising the Detection of Colorectal Cancer Liver Metastases with Dynamic Fdg Pet Acquisitions”, Internal Medicine Journal, vol. 45, pp. 21-44, Apr 2015.

Conference Papers – 2015

Conference Papers
  1. Anwar, W. Wilson, J. Ross, P. Molloy, D. Bauer, “Gene Ontology enrichment analysis for gene subsets of distinctive function.”, AGTA, Hunter Valley, 11-15 Oct 2015.
  2. Armin, H. De Visser, G. Chetty, C. Dumas, D. Conlan, F. Grimpen, O. Salvado, “Visibility map: A new method in evaluation quality of optical colonoscopy”, Medical image computing and computer assisted intervention (MICCAI), Munich, Germany, 05/10/2015.
  3. Bauer, N. Saunders, I. Blair, “NGSANE: A Lightweight Production Informatics and Presentation Framework for Mutation Detection in High-throughput Sequencing Data”, Hic2015, Brisbane, 3-5 August 2015.
  4. Bell, J. Dowling, E. Pogson, P. Metcalfe, L. Holloway, “Atlas based auto-segmentation method incorporating delineation uncertainty for whole breast radiotherapy”, Engineering and Physical Sciences in Medicine, Wellington, New Zealand, 8-12 November 2015.
  5. Bell, J. Dowling, E. Pogson, P. Metcalfe, L. Holloway, “Assessing a delineation margin for modern radiotherapy”, Engineering and Physical Sciences in Medicine, Wellington, New Zealand, 8-12 November 2015.
  6. Berkovsky, G. Hendrie, M. Noakes, J. Freyne, K. Usic, “The HealthierU Portal for Supporting Behaviour Change and Diet Programs”, HIC 2015, Brisbane, 3/8/2015.
  7. Bourgeat, V. Dore, J. Fripp, V. Villemagne, C. Rowe, O. Salvado, “Computational Analysis of PET by AIBL (CapAIBL): A cloud-based processing pipeline for the quantification of PET images”, SPIE Medical Imaging, Orlando, Florida, United States, 21 – 26 February 2015.
  8. Bourgeat, V. Dore, J. Fripp, D. Ames, C. Masters, C. Rowe, V. Villemagne, O. Salvado, t. AIBL Research Group, “Web-Based automated PET and MR quantification”, Health Informatics Conference, Brisbane, 3-5 August 2015.
  9. Bradford, D. Hansen, M. Karunanithi, “Making an APPropriate care program for Indigenous Cardiac Disease: Customization of an existing cardiac rehabilitation program”, 15th World Congress on Health and Biomedical Informatics, São Paulo, Brazil, 19-23 August 2015.
  10. Brindal, G. Hendrie, J. Freyne, M. Noakes, “MotiMate: A smartphone application for weight loss maintenance”, Australasian Society for Behavioural Health and Medicine, Perth, Australia, Feb 12, 2015.
  11. Burnham, P. Bourgeat, V. Dore, B. Brown, O. Salvado, R. Martins, L. Macaulay, C. Masters, C. Rowe, V. Villemagne, “Between SNAP and a hard Aβ rock: characterizing the fate of preclinical AD”, International Conference on Alzheimer’s and Parkinsons Diseases (ADPD), Nice, France, 18-22 march.
  12. De Vine, M. Kholghi, G. Zuccon, L. Sitbon, A. Nguyen, “Analysis of Word Embeddings and Sequence Features for Clinical Information Extraction”, Australasian Language Technology Association Workshop (ALTA), Sydney, 8-9 December 2015.
  13. Dodd, P. Hawting, E. Horton, M. Karunanithi, A. Livingstone, “Australian Community Care Experience on the Design, Development, Deployment and Evaluation of Implementing the Smarter Safer Homes Platform”, 13th International Conference On Smart Homes and Health Telematics, Geneva, Switzerland, 10-12 June 2015.
  14. Dowson, P. Thomas, J. Smith, O. Salvado, S. Rose, “Large Scale Simplex Optimisation to Accelerate Kinetic Analysis”, MICCAI – Computational Methods for Molecular Imaging, Boston, USA, 14-Sep-2014.
  15. Dowson, A. Pagnozzi, S. Fiori, J. Doecke, A. Guzzetta, R. Boyd, S. Rose, “Continuously improving cloud-based tools to drive decision making and enable remote access of medical experts for Cerebral Palsy”, Health Informatics Conference, Brisbane, 3-5 Aug 2015.
  16. Dunne, A. O’Brien, W. Wilson, P. Molloy, D. Bauer, “Cancer gene-interaction analysis using a data-driven inverse covariance matrix approach.”, AGTA, Hunter Valley, 11-14 Oct.
  17. Freyne, C. Pocock, D. Bradford, K. Harrap, S. Brinkmann, “Designing technology for assessments of CALD patients”, Health Informatics Conference, Brisbane, 03/08/2015.
  18. Ghafouryan Gomish Bashi, M. Karunanithi, “Tailored and personalised mobile health interventions for patients with chronic disease: Implication of health communication and patient centred approach”, HIC, Brisbane, August 2015.
  19. Ghose, J. Mitra, S. Rose, J. Dowling, “Data-driven Diagnosis of Benign and Malignant Samples of Breast Cytology”, Health informatics conference, Brisbane, 3-5 th August 2015.
  20. Ghose, J. Mitra, S. Khanna, J. Dowling, “Automatic Patient-specific Risk Prediction for In-Hospital Mortality of ICU Patients from Time Series Data”, Health Informatics Conference, Brisbane, 3rd August 2015.
  21. Ghose, J. Mitra, M. Karunanithi, J. Dowling, “Human Activity Recognition from Smartphone Sensor Data Using a Multi-Class Ensemble Learning”, Health Informatics Conference, Brisbane, 3rd August.
  22. Hassanzadeh, T. Groza, A. Nguyen, J. Hunter, “UQeResearch: Semantic Textual Similarity Quantification”, International Workshop on Semantic Evaluation, Denver, Colorado, June 4-5, 2015.
  23. Hassanzadeh, D. Molla, T. Groza, A. Nguyen, J. Hunter, “Similarity Metrics for Clustering PubMed Abstracts for Evidence Based Medicine”, Australasian Language Technology Association Workshop (ALTA), Sydney, 8th and 9th December, 2015.
  24. Heinrich, B. Broeksema, “Big Data Visual Analytics with Parallel Coordinates”, IEEE International Symposium on Big Data Visual Analytics, Hobart, TAS, 22-25 September 2015.
  25. Heinrich, S. Kaur, S. O’Donoghue, “Evaluating the Effectiveness of Color to Convey Uncertainty in Macromolecular Structures”, IEEE International Symposium on Big Data Visual Analytics, Hobart, TAS, 22-25 September 2015.
  26. Huang, H. Ding, D. Ireland, S. McBride, M. Karunanithi, “Use of smartphones to estimate carbohydrates in foods for diabetes management”, Health informatics conference 2015, Brisbane, 3 – 5 August 2015.
  27. Ireland, J. Liddle, S. McBride, H. Ding, C. Knuepffer, “Chat-Bots for People With Parkinson’s Disease: Science Fiction or Reality?”, Digital Health, E-Health and Health Informatics Conference, Brisbane, 03/8/2015.
  28. John, A. Wagholikar, “A Pilot Study to Improve Access to Eye Care Services for Patients in Rural India by Implementing Community Ophthalmology through Innovative Telehealth Technology”, Health Informatics Conference, HIC 2015, Brisbane Australia, 3 – 5 August 2015.
  29. Kanagasingam, J. Boyle, J. Vignarajan, D. Xiao, M. Zhang, “Establishing an Indigenous Tele-Eye Care Service”, IEEE EMBC15, Milan Italy, 25-29 August 2015.
  30. Karimi, A. Metke Jimenez, A. Nguyen, “CADEminer: A System for Mining Consumer Reports on Adverse Drug Side Effects”, ESAIR, Melbourne, 23/10/2015.
  31. Kholghi, L. Sitbon, G. Zuccon, A. Nguyen, “External Knowledge and Query Strategies in Active Learning: A Study in Clinical Information Extraction”, 24th ACM International Conference on Information and Knowledge Management (CIKM 2015), Melbourne, Australia, Oct 19-23, 2015.
  32. Koopman, G. Zuccon, A. Wagholikar, K. Chu, J. O’Dwyer, A. Nguyen, “Automated Reconciliation of Radiology Reports and Discharge Summaries”, AMIA, San Francisco, 14-18 November 2015.
  33. Leroux, A. Metke Jimenez, M. Lawley, “The importance of effectively normalising patient-reported medication intake”, Health Informatics Conference, Brisbane, Queensland, Australia, August 3-5 2015.
  34. Li, L. Alem, T. Huang, “Supporting Frontline Health Workers Through the Use of a Mobile Collaboration Tool”, Health Information Science: 4th International Conference, HIS 2015, Melbourne, Australia, 28-30 May 2015.
  35. Li, J. Zic, N. Oakes, D. Liu, C. Wang, “Secure Collaboration Platform: a Case Study in the Biosecurity Domain”, The 8th International Conference on Security Technology, Jeju Island, Korea, November 25 – 28, 2015.
  36. Lind, S. Khanna, J. Boyle, “Managing regular surge events at a hospital service”, HIC 2015, Brisbane, Australia, 3-5 August.
  37. Mokhtari, Q. Zhang, M. Karunanithi, “Modeling of Human Movement Monitoring Using Bluetooth Low Energy Technology”, EMBC2015, Milan-Italy, 25-29 August.
  38. Nguyen, J. Moore, J. O’Dwyer, S. Colquist, “Assessing the Utility of Automatic Cancer Registry Notifications Data Extraction from Free-Text Pathology Reports”, AMIA 2015 Annual Symposium, San Francisco. United States, November 14, 2015 – November 18, 2015.
  39. O’Brien, D. Bauer, “VariantSpark: applying Spark-based machine learning methods to genomic information”, Big Data 2015, Sydney, 20-21 October.
  40. Pagnozzi, N. Dowson, P. Bourgeat, S. Rose, B. Andrew, R. Boyd, “Expectation-maximization with image-weighted Markov Random Fields to handle severe pathology”, Digital Image Computing: Techniques and Applications (DICTA), Adelaide, SA, November 23-25.
  41. Pant, D. Rivest-Henault, P. Bourgeat, “Effcient Multi-Scale Patch-based Segmentation”, Patch-MI: Patch-based Technique in Medical Imaging, Munich, Germany, October 9th, 2015.
  42. Perdigao, T. Soldatos, K. Sabir, S. O’Donoghue, “Visual analytics of gene set comparison”, IEEE Symposium on Big Data Visual Analytics, Hobart, Australia, 22-25 September 2015.
  43. Rai, J. Dowling, S. Arumugam, B. Schmitt, A. Xing, L. Holloway, G. Liney, “Assessment of MRI sequences for imaging implantable radiotherapy markers in the prostate”, Engineering and Physical Sciences in Medicine, Wellington, New Zealand, 8-12 November 2015.
  44. Rembach, H. Vanderstichele, Q. Li, S. Varghese, S. Sarros, C. Fowler, C. Masters, S. Collins, E. Stoops, V. Hernst, J. Doecke, “The correlation between ß-amyloid PET-imaging and cerebrospinal fluid biomarkers is affected by the assay design.”, Alzheimer’s Association International Conference, Washington DC, July 18-23.
  45. Shen, V. Dore, S. Rose, J. Fripp, K. McMahon, G. de Zubicaray, N. Martin, P. Thompson, M. Wright, O. Salvado, “Heritability analysis of surface-based cortical thickness estimation on a large twin cohort”, SPIE Medical Imaging, Orlando, Florida, USA, 21-26 February 2015.
  46. Walker, G. Liney, L. Holloway, J. Dowling, D. Rivest-Henault, P. Metcalfe, “Variations in geometric distortion using static and moving table acquisition for radiotherapy treatment planning applications”, World Congress on Medical Physics and Biomedical Engineering (WC 2015), Toronto, Canada, June 7 to 12, 2015.
  47. Wang, X. Lin, L. Wu, W. Zhang, Q. Zhang, “LBMCH: Learning Bridging Mapping for Cross-modal Hashing”, SIGIR 2015, Santiago de Chile, 9~13 August.
  48. Xiao, J. Vignarajan, J. Boyle, M. Zhang, M. Estai, M. Tennant, M. Tay-Kearney, Y. Kanagasingam, “Development and practice of store-and-forward telehealth systems in ophthalmology dental and emergency”, HIC2015, Brisbane, Australia, 3-5, August 2015.
  49. Yin, Q. Zhang, M. Karunanithi, “Unsupervised Daily Routine and Activity Discovery in Smart Homes”, EMBC 2015, Milan, Italy, Aug 25 ~ Aug 29.
  50. Zic, N. Oakes, D. Liu, J. Li, C. Wang, S. Chen, “A Secure Integrated Platform for rapidly formed multiorganisation collaborations”, ARES AU2EU 2015 Workshop on Security and Privacy in Cloud-based Applications, Université Paul Sabatier Toulouse, France, August 24-28, 2015.
  51. Zuccon, B. Koopman, P. Bruza, L. Azzopardi, “Integrating and Evaluating Neural Word Embeddings in Information Retrieval”, Australian Document Computing Symposium, Sydney, Dec 3 2015.
  52. Abdolkhani, F. Fatehi, M. Karunanithi, “A model of mobile diabetes management system based on diabetes core dataset”, The 2015 International Conference on Successes and Failures in Telehealth (SFT-15), Brisbane, 12-13 Novermber 2015.
  53. Anwar, W. Wilson, J. Ross, P. Molloy, D. Bauer, “Gene Ontology enrichment analysis for gene subsets of distinctive function.”, Australian Bioinformatics And Computational Biology Society, Sydney, 10-11 October.
  54. Baker, N. Mark, M. Karunanithi, S. Colin, “Contactless monitoring for sleep disordered-breathing, respiratory and cardiac co-morbidity in an elderly independent living cohort”, European Respiratory Society 2015 International Congress, Amsterdam, Netherlands, 26-30 September 2015.
  55. Bourgeat, V. Dore, J. Fripp, V. Villemagne, C. Rowe, O. Salvado, “Computational Analysis of PET by AIBL (CapAIBL): A cloud-based processing pipeline for the quantification of PET images”, SNMMI 2015 Annual Meeting, Baltimore, Maryland, USA, 6-10 June 2015.
  56. Bourgeat, V. Dore, S. Burnham, B. Brown, D. Ames, R. Martins, C. Masters, O. Salvado, C. Rowe, V. Villemagne, “Characterising patterns of atrophy between cognitively unimpaired healthy elderly controls with either AD or suspected non–AD pathophysiology”, Alzheimer’s Association International Conference, Washington, DC, USA, July 18-23 2015.
  57. Bourgeat, V. Dore, J. Fripp, D. Ames, C. Masters, C. Rowe, V. Villemagne, O. Salvado, “Web-Based automated PET and MR quantification”, Alzheimer’s Association International Conference, Washington, DC, USA, July 18-23 2015.
  58. Bradford, “Global Megatrends and how they will affect aged care”, Residential Aged Care Management – Meeting the Challenges, Melbourne, 7-8 May 2015.
  59. Bradford, D. Hansen, M. Karunanithi, “Hearts in Hand: Development of a smartphone-delivered cardiac health program to improve accessibility to cardiac care for urban and remote Indigenous Australians.”, Cardiac, Diabetes & Renal Combined Forum, Cairns, 4 June 2015.
  60. Bradford, “Opportunities to enhance Indigenous health autonomy: developing smartphone delivery of a program for chronic health.”, 2015 National Indigenous Health Conference, Cairns, 1-3 December 2015.
  61. Budgeon, K. Murray, B. Turlach, V. Villemagne, D. Baker, S. Burnham, “Techniques for Assessing Alzheimer’s Disease Progression”, AAIC15, Washington, July 2015.
  62. Burnham, P. Bourgeat, V. Dore, B. Brown, O. Salvado, R. Martins, L. Macaulay, D. Ames, C. Masters, C. Rowe, V. Villemagne, “The Cognitive and Brain Volumetric Trajectories of Healthy Ederly Controls with either Alzheimer’s Pathology, Neurodegeneration (SNAP) or both”, AAIC15, Washington, July 2015.
  63. Burnham, “Biomarkers for identifying the pre-symptomatic window in AD”, COMBIO, Melbourne, Sept 2015.
  64. Cespedes, J. McGree, C. Drovandi, K. Mengersen, J. Doecke, J. Fripp, “Statistical methods for spatio-temporal modelling of longitudinal neuroimaging data”, Bayes on the beach, Mantra Legends Hotel – Surfers Paradise QLD, 7-9 December 2015.
  65. Cleanthous, J. Freyne, M. Noakes, “Technology assisted supermarket nutrition data collection system”, Australian Institute of Food Science and Technology, Sydney, August 2015.
  66. Dore, S. Laws, P. Bourgeat, J. Fripp, L. Macaulay, D. Ames, K. Ellis, P. Maruff, R. Martins, C. Masters, C. Rowe, O. Salvado, V. Villemagne, “BDNF, Aβ and cortical atrophy in preclinical Alzheimer’s disease”, AAIC, Washington, july 2015.
  67. Dore, P. Bourgeat, J. Fripp, L. Macaulay, R. Martins, K. Ellis, D. Ames, C. Masters, C. Rowe, O. Salvado, V. Villemagne, “Interaction between 18F-THK5317, 18F-Flutemetamol SUVR and cortical thickness”, AAIC, Washignton, July 2015.
  68. Fatehi, A. Russell, H. Ding, D. Bird, M. Karunanithi, L. Gray, “Design of a mobile-based diabetes management system for insulin titration in type 2 diabetes: a proof of concept study”, The 2015 International Conference on Successes and Failures in Telehealth (SFT-15), Brisbane, 12-13 November 2015.
  69. Fazlollahi, F. Calamante, X. Liang, N. Good, D. Ames, C. Masters, F. Meriaudeau, A. Connelly, C. Rowe, V. Villemagne, O. Salvado, P. Bourgeat, “Decreases in cerebral blood flow are associated with Abeta status in preclinical Alzheimer’s disease”, Alzheimer’s Association International Conference (AAIC), Washangton, D.C., July 18-23 , 2015.
  70. Freyne, X. Cleanthous, M. Noakes, “FoodTrack: A digital platform for nutrition data collection”, Workshop on Multimedia Assisted Dietary Management, Italy, September 2015.
  71. Gaff, W. Wilson, I. Macciocca, N. Thorne, M. Martyn, G. Brett, E. Wilkins, S. Metcalfe, E. Forbes, E. Creed, T. Bakker, M. Turner, A. Johnstone, “Melbourne Genomics Health Alliance: evaluating a whole of system approach to implementation of genomics into clinical practice”, European Society of Human Genetics, Glasgow, June 6-9, 2015.
  72. Ghafouryan Gomish Bashi, F. Fatehi, M. Karunanithi, “Remote monitoring of patients with heart failure: a review of Systematic Reviews”, SAF-15 and the 6th Annual Meeting of the Australasian Telehealth Society, Brisbane, 12-13 November.
  73. Ghose, J. Mitra, D. Rivest-Henault, A. Fazlollahi, P. Stanwell, P. Pichler, P. Greer, J. Fripp, J. Dowling, “Automatic fiducial detection in T2 weighted MRI in a manifold learning framework”, ISMRM, Toronto, Canada, 30th May – 5th June.
  74. Ghose, J. Mitra, D. Rivest-Henault, J. Sun, P. Pichler, P. Greer, J. Dowling, “Synthetic CT generation from T2 weighted MRI using a hybrid regression and multi-atlas approach”, ISMRM, Toronto, Canada, 30th May – 5th June.
  75. Jayasena, J. Li, M. Varnfield, B. Celler, S. Nepal, “Organisational challenges and moving towards a national deployment model for chronic disease management in the home using Telehealth”, HIC 2015, Brisbane, August 2015.
  76. Jayasena, M. Varnfield, J. Li, R. Sparks, S. Nepal, B. Celler, “Chronic Disease Management in the Community Using Telehealth: Organisational Challenges and Moving Towards a Sustainable Model.”, 6th SFT-15, 6th Annual Meeting of the Australasian Telehealth Society Nov 2015, Brisbane, QLD, November 2015.
  77. Khor, A. Nguyen, J. O’Dwyer, G. Kothari, J. Sia, D. Chang, S. Ng, G. Duchesne, F. Foroudi, “Development and evaluation of an automated system to detect clinical stage data from the electronic record in patients with genitourinary cancers”, The Royal Australian and New Zealand College of Radiologists’ 2015 Annual Scientific Meeting (RANZCR 2015), Adelaide, Australia, 29 October – 1 November 2015.
  78. Mitchell, J. Ross, H. Drew, T. Ho, G. Brown, N. Saunders, K. Duesing, M. Buckley, R. Dunne, I. Beeston, K. Rand, A. McEvoy, M. Thomas, R. Baker, D. Wattchow, G. Young, T. Lockett, S. Pedersen, L. LaPointe, P. Molloy, “Colorectal cancer methylation biomarkers”, Australasian Genomic Technologies Association Conference 2014, Melbourne, 12-15 October, 2014.
  79. Mitra, E. Conti, K. Shen, P. Bourgeat, J. Fripp, O. Salvado, S. Calderoni, A. Guzzetta, S. Rose, “Diffusion MRI identifies enhanced connection of neural pathways in toddlers with Autism Spectrum Disorder”, ISMRM, Toronto, Canada, 30 May – 5 June, 2015.
  80. Mitra, S. Ghose, K. Shen, K. Pannek, P. Bourgeat, J. Fripp, O. Salvado, J. Taylor, J. Mathias, S. Rose, “A machine learning approach to identify structural connections affected in diffuse axonal injury”, ISMRM, Toronto, Canada, 30 May – 5 June, 2015.
  81. Mitra, P. Bourgeat, J. Fripp, O. Salvado, B. Campbell, S. Palmer, P. Goodin, A. Connelly, S. Rose, L. Carey, “A study on brain-behaviour functional relations in areas affected due to ischemic stroke using diffusion MRI”, ISMRM, Toronto, Canada, 30 May – 5 June, 2015.
  82. Nepal, J. Jang-Jaccard, R. Jayasena, B. Celler, R. Sparks, M. Varnfield, J. Li, “A Secure Data Architecture for Telehealth Trial”, HIC 2015, Brisbane, 3-5 Aug, 2015.
  83. Papp, R. Amariglio, S. Wigman, S. Burnham, J. Chhatal, R. Sperling, D. Rentz, “The Neuropsychology of Preclinical Alzheimer’s Disease: Differential Sensitivity of Component Processes of Memory Performance on Biomarker Evidence of Amyloidosis”, American Academy of Neurology National Meeting, Washington D.C., 18-25 April 2015.
  84. Puttick, N. Dowson, M. Fay, C. Bell, J. Martin, S. Rose, “Effect of ligand size on uptake and washout of EphA2 targeted theranostics from Glioblastomas using 64Cu-PET”, BrainPET, Vancouver, Canada, 27-30 Jun 2015.
  85. Reid, R. Cunnington, R. Boyd, S. Rose, “Mesh-based fMRI-driven-tractography for automated analyses of non-parcellateable brains with pathology”, International Society for Magnetic Resonance in Medicine, Toronto, 1 June 2015.
  86. Rowe, V. Dore, P. Bourgeat, B. Brown, L. Thurfjell, L. Macaulay, R. Williams, O. Salvado, R. Martins, D. Ames, C. Masters, V. Villemagne, “Aβ Accumulation in Non-Demented Individuals: A Longitudinal F-18-Flutemetamol Study”, Alzheimer’s Association International Conference, Washington DC, USA, 18-24 July 2015.
  87. Saunders, K. Sabir, S. O’Donoghue, D. Bauer, “Visualization of Variants using Aquaria: non-synonymous SNPs in the context of protein structure”, AGTA, Hunter Valley, 11-15 Oct 2015.
  88. Saunders, K. Sabir, A. O’Brien, S. O’Donoghue, D. Bauer, “Visualization of Variants using Aquaria: non-synonymous SNPs in the context of protein structure”, ABACBS 2015, Garvan Institute of Medical Research, Sydney, NSW, October 10-11 2015.
  89. Sobhanmanesh, Y. Oytam, S. O’Donoghue, J. Ross, “Software to explore and characterise global patterns in high dimensional data”, Australian Bioinformatics Conference, Melbourne, 11-12 October, 2014.
  90. Sobhanmanesh, Y. Oytam, S. O’Donoghue, J. Ross, “Software for rapidly and intuitively understanding global patterns in ‘omics data”, Australasian Genomic Technologies Association Conference 2014, Melbourne, 12-15 October 2014.
  91. Sparks, N. Good, “Monitoring the probability of chronically sick patients going to hospital”, Applied Stochastic Models and Data Analysis (ASMDA) 2015, Univeristy of Piraeus, Athens, Greece, 30 June to 4 july 2015.
  92. Tellam, T. Vuocolo, A. Statham, D. Bauer, S. McWilliam, S. Nair, J. Morrison, S. Zhang, M. Buckley, I. McMillen, S. Clark, “The epigenetic and transcriptional basis of the developmental transition from brown to white adipose tissue reveals nonconcordant changes in chromatin and DNA methylation”, Epigenetics 2015, Hobart, November 12-14, 2015.
  93. Varnfield, J. Li, R. Jayasena, S. Nepal, R. Sparks, B. Celler, “A study on the quality of life and psychological outcomes in elderly patients in home telemonitoring”, HIC 2015, Brisbane, 3-5 August.
  94. Varnfield, S. Damen, M. Karunanithi, “Stem Cell Transplants – mobile technology can provide support in service delivery to cancer patients”, HIC 2015, Brisbane, 3-5 August.
  95. Villemagne, P. Bourgeat, V. Dore, L. Macaulay, R. Williams, D. Ames, R. Martins, O. Salvado, K. Chen, E. Reiman, C. Masters, C. Rowe, “Amyloid Imaging in Therapeutic Trials: The Quest for the Optimal Reference Region”, Alzheimer’s Association International Conference, Washington DC, USA, 18-23 July 2015.
  96. Wagholikar, B. Koopman, A. Nguyen, J. O’Dwyer, K. Chu, I. Abdelmahmoud, “An IT Solution for Efficient Checking of X-ray Reports to Prevent Missed Fractures in Emergency Departments”, Health Informatics Conference (HIC 2015), Brisbane, Australia, 3-5 August 2015.
  97. Wagholikar, “Collaborative personal health record-based online solution for better chronic disease management”, Health Informatics Conference, Melbourne, 11 August – 14 August 2014.
  98. Wagholikar, H. Ding, “Remote monitoring of Advanced Prostate Cancer patients after Androgen Deprivation Therapy using Mobile Health Technology: Opportunities for novel care models”, Prostate Cancer World Congress 2015, Cairns Convention Centre, Cairns, Queensland, August 17 – August 21.
  99. Walker, G. Liney, L. Holloway, J. Dowling, D. Rivest-Henault, P. Metcalfe, “3D mapping of geometric distortions using static and moving table acquisitions for the purposes of MR-planned Radiotherapy”, ISMRM Annual Meeting, Toronto, Canada, 30 May – 5 June 2015.
  100. Xiao, J. Vignarajan, M. Estai, M. Tennant, Y. Kanagasingam, “Tele-Dentistry Pilot Study: Cloud and smart phone based dental screening system”, Successes and Failures in Telehealth 2015, Brisbane, 12-13 November 2015.
  101. van Havre, V. Villemagne, J. Doecke, “Investigating the early development of Alzheimer’s Disease using overfitted Bayesian mixture models.”, Bayes on the Beach, Mantra Legends Hotel, Surfers Paradise Boulevard, Surfers Paradise, QLD 4217, 7th-9th December 2015.

Journal Papers – 2014

Book Chapters
  1. Bauer, C. Gaff, M. Dinger, M. Caramins, F. Buske, M. Fenech, D. Hansen, L. Cobiac, “Genomics and personalised whole-of-life healthcare”, Trends in Molecular Medicine, vol. 20, pp. 479-486, Sep 2014.
  2. Bell, K. Pannek, M. Fay, P. Thomas, P. Bourgeat, O. Salvado, Y. Gal, A. Coulthard, S. Crozier, S. Rose, “Distance informed Track-Weighted Imaging (diTWI): A framework for sensitising streamline information to neuropathology”, Neuroimage, vol. 86, pp. 60-66, Feb 2014.
  3. Bell, S. Rose, S. Puttick, A. Pagnozzi, C. Poole, Y. Gal, P. Thomas, M. Fay, R. Jeffree, N. Dowson, “Dual acquisition of 18F-FMISO and 18F-FDOPA”, Physics in Medicine Biology, vol. 59, pp. 3925-3949, Jul 2014.
  4. Bhuiyan, C. Karmaker, R. Kawasaki, E. Lamoureux, K. Ramamohanarao, Y. Kanagasingam, T. Wong, “Retinal artery and venular caliber grading: a semi-automated evaluation tool”, Computers in Biology and Medicine, vol. 44, pp. 1-9, Jan 2014.
  5. Bhuiyan, D. Xiao, Y. Kanagasingam, “A Review of Disease Grading and Remote diagnosis for Sight Threatening Eye Condition: Age Related Macular Degeneration”, Journal of Computer Science and Systems Biology, vol. 7, pp. 62-71, Jan 2014.
  6. Bhuiyan, C. Cheung, S. Frost, E. Lamoureux, P. Mitchell, Y. Kanagasingam, T. Wong, “Development and Reliability of Retinal Arteriolar Central Light Reflex Quantification System: A New Approach for Severity Grading”, Investigative Ophthalmology and Visual Science, pp. 1-28, Oct 2014.
  7. Binder, S. Pletscher-Frankild, K. Tsafou, C. Stolte, S. O’Donoghue, R. Schneider, L. Jensen, “Compartments: unification and visualization of protein subcellular localization evidence”, Database: the Journal of Biological Databases and Curation, vol. 2014, pp. bau012 (9 pp), Jan 2014.
  8. Boyle, K. Zeitz, R. Hoffman, S. Khanna, J. Beltrame, “Probability of severe adverse events as a function of hospital occupancy”, IEEE Journal of Biomedical and Health Informatics, vol. 18, pp. 15-20, Jan 2014.
  9. Brown, P. Bourgeat, J. Peiffer, S. Burnham, S. Laws, S. Rainey-Smith, D. Bartres-Faz, V. Villemagne, K. Taddei, A. Rembach, A. Bush, K. Ellis, L. Macaulay, C. Rowe, D. Ames, C. Masters, P. Maruff, R. Martins, “Influence of BDNF Val66Met on the relationship between physical activity and brain volume”, Neurology, vol. 83, pp. 1345-1352, Oct 2014.
  10. Burnham, N. Faux, W. Wilson, S. Laws, D. Ames, J. Bedo, A. Bush, J. Doecke, K. Ellis, G. Jones, H. Kiiveri, R. Head, R. Martins, A. Rembach, C. Rowe, O. Salvado, L. Macaulay, C. Masters, V. Villemagne, “A blood based predictor for neocortical Aβ burden in Alzheimer’s disease: results from the Australian Imaging, Biomarkers and lifestyle study of ageing”, Molecular Psychiatry, vol. 19, pp. 519-526, Apr 2014.
  11. Buske, H. French, M. Smith, S. Clark, D. Bauer, “NGSANE: A Lightweight Production Informatics Framework for High-Throughput Data Analysis”, Bioinformatics, vol. 30, pp. 1471-1472, May 2014.
  12. Celler, R. Sparks, S. Nepal, L. Alem, M. Varnfield, J. Li, J. Jang-Jaccard, S. McBride, R. Jayasena, “Design of a multi-site multi-state clinical trial of home monitoring of chronic disease in the community in Australia”, BMC Public Health, vol. 14, pp. 1471-2458, Dec 2014.
  13. Chandra, Y. Xia, C. Engstrom, S. Crozier, R. Schwarz, J. Fripp, “Focused shape models for hip joint segmentation in 3D magnetic resonance images”, Medical Image Analysis, vol. 18, pp. 567-578, Apr 2014.
  14. Ding, “Characterization of local complex structures in recurrence plot to improve nonlinear dynamic discriminant analysis”, Physical Review E, vol. 89, pp. 013313 (8 pp), Jan 2014.
  15. Ding, M. Karunanithi, Y. Kanagasingam, J. Vignarajan, Y. Moodley, “A pilot study of a mobile-phone-based home monitoring system to assist in remote interventions in cases of acute exacerbation of COPD”, Journal of Telemedicine and Telecare, vol. 20, pp. 128-134, Apr 2014.
  16. Doecke, T. Chekouo, F. Stingo, K. Do, “miRNA target gene identification: sourcing miRNA-target gene relationships for the analyses of TCGA Illumina MiSeq and RNA-Seq HiSeq platform data.”, International Journal of Human Genetics, vol. 14, pp. 17-22, Mar 2014.
  17. Dowling, K. Dang, C. Fox, S. Chandra, S. Gill, T. Kron, D. Pham, F. Faroudi, “Fast cine-magnetic resonance imaging point tracking for prostate cancer radiation therapy planning”, Journal of Physics: Conference Series, vol. 489, pp. 012027 (6 pp), Mar 2014.
  18. Dowling, N. Burdett, P. Greer, J. Sun, J. Parker, P. Pichler, P. Stanwell, S. Chandra, D. Rivest-Henault, S. Ghose, O. Salvado, J. Fripp, “Automatic atlas based electron density and structure contouring for MRI-based prostate radiation therapy on the cloud”, Journal of Physics: Conference Series, vol. 489, pp. 012048 (6 pp), Mar 2014.
  19. Dowling, “Opportunities for image analysis in radiation oncology”, Australasian Physical & Engineering Sciences in Medicine, vol. 37, pp. 275-277, Jun 2014.
  20. Dowson, P. Thomas, M. Fay, R. Jeffree, Y. Gal, P. Bourgeat, J. Smith, C. Winter, A. Coulthard, O. Salvado, S. Crozier, S. Rose, “Early prediction of treatment response in advanced gliomas with 18F-DOPA positron-emission tomography”, Current Oncology, vol. 21, pp. e172-e178, Feb 2014.
  21. Dowson, M. Fay, P. Thomas, R. Jeffree, R. McDowall, C. Winter, A. Coulthard, J. Smith, Y. Gal, P. Bourgeat, O. Salvado, S. Crozier, S. Rose, “Contribution of FDOPA PET to radiotherapy planning for advanced glioma”, Journal of Physics: Conference Series, vol. 489, pp. 012028 (5 pp), Mar 2014.
  22. Dowson, P. Thomas, Y. Gal, M. Fay, R. Jeffree, C. Winter, A. Coulthard, J. Smith, P. Bourgeat, O. Salvado, S. Crozier, S. Rose, “Assessing local outcomes in heterogeneous gliomas”, Journal of Physics: Conference Series, vol. 489, pp. 012073 (4 pp), Mar 2014.
  23. Dowson, M. Boult, P. Cowled, T. De Loryn, R. Fitridge, “Development of an automated measure of iliac artery tortuosity that successfully predicts early graft-related complications associated with endovascular aneurysm repair”, European Journal of Vascular and Endovascular Surgery, vol. 48, pp. 153–160, Aug 2014.
  24. Duncan, C. Vandelanotte, G. Kolt, R. Rosenkranz, C. Caperchione, E. George, H. Ding, C. Hooker, M. Karunanithi, A. Maeder, M. Noakes, R. Tague, P. Taylor, P. Viljoen, K. Mummery, “Effectiveness of a web- and mobile phone-based intervention to promote physical activity and healthy eating in middle-aged males: randomized controlled trial of the ManUp Study”, Journal of Medical Internet Research, vol. 16, pp. e136, Jun 2014.
  25. Fay, J. Martin, S. Rose, “New imaging techniques for more effective treatment in glioblastoma”, Internal Medicine Journal, vol. 44, pp. 5-6, Jan 2014.
  26. Ferreira, H. Guo, R. Coulson, D. Smyth, M. Pekalski, O. Burren, A. Cutler, J. Doecke, S. Flint, E. McKinney, P. Lyons, K. Smith, P. Achenbach, A. Beyerlein, D. Dunger, L. Wicker, J. Todd, E. Bonifacio, C. Wallace, A. Ziegler, “A Type I Interferon transcriptional signature precedes autoimmunity in children genetically at risk for type 1 diabetes”, Diabetes, vol. 63, pp. 2538-2550, Jul 2014.
  27. Fiori, G. Cioni, K. Klingels, E. Orbibus, S. Rose, L. Van Gestel, R. Boyd, H. Feys, A. Guzzetta, “Reliability of a novel, semi-quantitative scale for classification of structural brain magnetic resonance imaging in children with cerebral palsy”, Developmental Medicine & Child Neurology, vol. 56, pp. 839-845, Sep 2014.
  28. Fiot, H. Raguet, L. Risser, L. Cohen, J. Fripp, F. Vialard, “Longitudinal deformation models, spatial regularizations and learning strategies to quantify Alzheimer’s disease progression”, NeuroImage Clinical, vol. 4, pp. 718–729, May 2014.
  29. Gal, N. Dowson, P. Bourgeat, O. Salvado, P. Thomas, M. Fay, S. Rose, R. Jeffery, A. Fazlollahi, S. Crozier, “Amorphous Regions-of-Interest Projection Method for Simplified Longitudinal Comparison of Dynamic Regions in Cancer Imaging”, IEEE Transactions on Biomedical Engineering, vol. 61, pp. 264-272, Feb 2014.
  30. Greenfield, K. Duesing, A. Papanicolaou, D. Bauer, “Blue: correcting sequencing errors using consensus and context”, Bioinformatics, vol. 30, pp. 2723-2732, Oct 2014.
  31. Grottel, J. Heinrich, D. Weiskopf, S. Gumhold, “Visual Analysis of Trajectories in Multi-Dimensional State Spaces”, Computer Graphics Forum, vol. 33, pp. 310-321, Sep 2014.
  32. Heinrich, M. Krone, S. O’Donoghue, M. Weiskopf, “Visualising intrinsic disorder and conformational variation in protein ensembles”, Faraday Discussions, vol. 169, pp. 179-193, Feb 2014.
  33. Honeyman, H. Ding, M. Varnfield, M. Karunanithi, “Mobile Health Applications in Cardiac Care”, Interventional Cardiology, vol. 6, pp. 227-240, Apr 2014.
  34. Ishani, K. Sinclair, S. Fiori, K. Pannek, M. Lavin, S. Rose, “Altered corticomotor-cerebellar integrity in young ataxia telangiectasia patients”, Movement Disorders, vol. 29, pp. 1289-1298, Sep 2014.
  35. Jang-Jaccard, S. Nepal, L. Alem, J. Li, “Barriers for Delivering Telehealth in Rural Australia: A Review Based on Australian Trials and Studies”, Telemedicine and e-Health, vol. 20, pp. 496-504, May 2014.
  36. Jang-Jaccard, S. Nepal, B. Celler, B. Yan, “WebRTC-based Video Conferencing Service for Telehealth”, Computing Journal: The special issue on : Software Tools and Technologies for Delivering Smart Media – Optimized Applications in the CLOUD, vol. 1, pp. 1-25, Sep 2014.
  37. Johnson, P. Graham, W. Wilson, L. Macaulay, P. Maruff, G. Savage, K. Ellis, R. Martins, C. Rowe, C. Masters, D. Ames, P. Zhang, “Genetic algorithm with logistic regression for prediction of progression to Alzheimer’s disease”, BMC Bioinfomatics, vol. 15, pp. S11, Nov 2014.
  38. Kanagasingam, A. Bhuiyan, M. Abramoff, R. Smith, L. Goldschmidt, T. Wong, “Progress on retinal image analysis for age related macular degeneration”, Progress in Retinal and Eye Research, vol. 38, pp. 20-42, Jan 2014.
  39. Kerbler, J. Fripp, C. Rowe, V. Villemagne, S. Rose, O. Salvado, E. Coulson, “Basal forebrain atrophy correlates with amyloid burden in Alzheimer’s disease”, NeuroImage Clinical, vol. 7, pp. 105-13, Nov 2014.
  40. Khanna, J. Boyle, K. Zeitz, “Using Capacity Alert calls to effectively manage hospital overcrowding”, Australian Health Review, vol. 38, pp. 318-324, May 2014.
  41. Laske, H. Sohrabi, S. Frost, K. Lopez-de-Ipina, P. Garrard, M. Buscema, J. Dauwels, S. Soekadar, S. Mueller, C. Linnemann, S. Bridenbaugh, Y. Kanagasingam, R. Martins, S. O’Bryant, “Innovative diagnostic tools for early detection of Alzheimer´s disease”, Alzheimer’s and Dementia, vol. 14, pp. 5, Nov 2014.
  42. Liddle, D. Ireland, S. McBride, S. Brauer, L. Hall, H. Ding, M. Karunanithi, P. Hodges, D. Theodoros, P. Silburn, H. Chenery, “Measuring the lifespace of people with Parkinson’s disease using smartphones: proof of principle”, JMIR Mhealth and Uhealth, vol. 2, pp. e13 (13 pp), Jan 2014.
  43. Lim, V. Villemagne, S. Laws, D. Ames, R. Pietrzak, K. Ellis, K. Harrington, P. Bourgeat, A. Bush, R. Martins, C. Masters, C. Rowe, P. Maruff, “Effect of BDNF Val66Met on memory decline and hippocampal atrophy in prodromal Alzheimer’s disease: a preliminary study”, PLoS ONE, vol. 9, pp. e86498 (5 pp), Jan 2014.
  44. Litjens, R. Toth, W. Van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, G. Guillard, N. Birbeck, J. Zhang, R. Strand, F. Malmberg, Y. Ou, C. Davatzikos, M. Kirschner, F. Jung, J. Yuan, W. Qiu, Q. Gao, P. Edwards, B. Mann, F. van der Heijden, S. Ghose, J. Mitra, J. Dowling, D. Barrat, H. Huisman, A. Madabhushi, “Evaluation of prostate segmentation algorithms for MRI: the PROMISE12 challenge”, Medical Image Analysis, vol. 18, pp. 359-373, Feb 2014.
  45. Mitchell, J. Ross, H. Drew, T. Ho, G. Brown, N. Saunders, K. Duesing, M. Buckley, R. Dunne, I. Beeston, K. Rand, A. McEvoy, M. Thomas, R. Baker, D. Wattchow, G. Young, T. Lockett, S. Pedersen, L. LaPointe, P. Molloy, “A panel of genes methylated with high frequency in colorectal cancer”, BMC Cancer, vol. 14, pp. 15, Jan 2014.
  46. Mitra, P. Bourgeat, J. Fripp, S. Ghose, S. Rose, O. Salvado, A. Connelly, B. Campbell, S. Palmer, G. Sharma, S. Christensen, L. Carey, “Lesion segmentation from multimodal MRI using random forest following ischemic stroke”, NeuroImage, vol. 98, pp. 324-335, Sep 2014.
  47. Nepal, J. Jang-Jaccard, J. Li, L. Alem, “A Framework for Telehealth Program Evaluation”, Telemedicine and e-Health, vol. 20, pp. 1-12, Mar 2014.
  48. Neubert, J. Fripp, C. Engstrom, G. Yaniv, S. Crozier, M. Kingsley, “Validity and reliability of computerized measurement of lumbar intervertebral disc height and volume from magnetic resonance images”, The Spine Journal, vol. 14, pp. 2773-2781, Nov 2014.
  49. O’Leary, D. Bradford, M. Chen, A. White, D. Blackmore, H. Cooper, “The Netrin/RGM Receptor, Neogenin, Controls Adult Neurogenesis by Promoting Neuroblast Migration and Cell Cycle Exit”, Stem Cells, vol. 33, pp. 503-514, Oct 2014.
  50. Pannek, S. Scheck, P. Colditz, R. Boyd, S. Rose, “Magnetic resonance diffusion tractography of the preterm infant brain: a systematic review”, Developmental Medicine & Child Neurology, vol. 56, pp. 113-124, Feb 2014.
  51. Pannek, R. Boyd, S. Fiori, A. Guzzetta, S. Rose, “Assessment of the structural brain network reveals altered connectivity in children with unilateral cerebral palsy due to periventricular white matter lesions”, Neuroimage Clinical, vol. 5, pp. 84-92, Jul 2014.
  52. Paproki, C. Engstrom, S. Chandra, A. Neubert, J. Fripp, S. Crozier, “Automated Segmentation and Analysis of Normal and Osteoarthritic Knee Menisci from Magnetic Resonance Images – Data from the Osteoarthritis Initiative”, Osteoarthritis and Cartilage, vol. 22, pp. 1259-1270, Jun 2014.
  53. Qi, Q. Zhang, Y. Zhu, J. Qi, “A novel method for fast change-point detection on simulated time series and electrocardiogram data”, PLoS ONE, vol. 9, pp. e93365 (15 pp), Apr 2014.
  54. Rembach, D. Hare, J. Doecke, S. Burnham, I. Volitakis, C. Fowler, R. Cherny, C. McLean, R. Grimm, R. Martins, C. Masters, A. Bush, B. Roberts, “Decreased serum zinc is an effect of ageing and not Alzheimer’s disease”, Metallomics, vol. 6, pp. 1216-1219, Jul 2014.
  55. Rembach, A. Watt, W. Wilson, S. Rainey-Smith, K. Ellis, C. Rowe, V. Villemagne, A. Bush, R. Martins, D. Ames, C. Masters, J. Doecke, “An increased neutrophil-lymphocyte ratio in Alzheimer’s disease is a function of age and is weakly correlated with neocortical amyloid accumulation”, Journal of Neuroimmunology, vol. 273, pp. 65-71, Aug 2014.
  56. Rivest-Henault, N. Dowson, P. Greer, J. Dowling, “Inverse-consistent rigid registration of CT and MR for MR-based planning and adaptive prostate radiation therapy”, Journal of Physics: Conference Series, vol. 489, pp. 12039, Apr 2014.
  57. Roberts, J. Mathias, S. Rose, “Diffusion Tensor Imaging (DTI) Findings Following Pediatric Non-Penetrating TBI: A Meta-Analysis”, Developmental Neuropsychology, vol. 39, pp. 600-637, Nov 2014.
  58. Sahama, K. Sinclair, K. Pannek, M. Lavin, S. Rose, “Radiological Imaging in Ataxia Telangiectasia: a review”, The Cerebellum, vol. 13, pp. 521-530, Aug 2014.
  59. Salvado, “Book review”, Australian & New Zealand Journal of Statistics, vol. 56, pp. 432–433, Dec 2014.
  60. Shen, S. Rose, J. Fripp, K. McMahon, G. de Zubicaray, N. Martin, P. Thompson, M. Wright, O. Salvado, “Investigating brain connectivity heritability in a twin study using diffusion imaging data”, NeuroImage, vol. 100, pp. 628-641, Oct 2014.
  61. Shen, S. Rose, J. Fripp, G. de Zubicaray, K. McMahon, N. Martin, P. Thompson, M. Wright, O. Salvado, “Investigating brain connectivity heritability in a twin study using diffusion imaging data”, NeuroImage, vol. 100, pp. 628-641, Oct 2014.
  62. Short, C. Vandelanotte, M. Dixon, R. Rosenkranz, C. Caperchione, C. Hooker, M. Karunanithi, G. Kolt, A. Maeder, H. Ding, P. Taylor, M. Duncan, “Examining participant engagement in an information technology-based physical activity and nutrition intervention for men: the ManUp randomized controlled trial”, JMIR Research Protocols, vol. 3, pp. e2(13 pp), Jan 2014.
  63. Sun, P. Pichler, J. Dowling, F. Menk, P. Stanwell, J. Arm, P. Greer, “MR simulation for prostate radiation therapy: effect of coil mounting position on image quality”, British Journal of Radiology, vol. 87, pp. 20140325, Sep 2014.
  64. Symonds, P. Bruza, G. Zuccon, B. Koopman, L. Sitbon, I. Turner, “Automatic Query Expansion: a Structural Linguistic Perspective”, Journal of the American Society for Information Science and Technology, vol. 65, pp. 1577–1596, Aug 2014.
  65. Tsao, K. Pannek, S. Fiori, R. Boyd, S. Rose, “Reduced integrity of sensorimotor projections traversing the posterior limb of the internal capsule in children with congenital hemiparesis”, Research in Developmental Disabilities, vol. 35, pp. 250-260, Feb 2014.
  66. Varnfield, M. Karunanithi, C. Lee, E. Honeyman, D. Arnold, H. Ding, C. Smith, D. Walters, “Smartphone-based home care model improved use of cardiac rehabilitation in post-myocardial infarction patients: results from a randomized controlled trial.”, Heart, vol. 100, pp. 1770-1779, Nov 2014.
  67. Villemagne, S. Furumoto, M. Fodero-Tavoletti, R. Mulligan, J. Hodges, R. Harada, P. Yates, O. Piguet, S. Pejoska, V. Dore, K. Yanai, C. Masters, Y. Kudo, C. Rowe, N. Okamura, “In vivo evaluation of a novel tau imaging for Alzheimer’s disease”, European Journal of Nuclear Medicine and Molecular Imaging, vol. 41, pp. 816-826, May 2014.
  68. Villemagne, V. Dore, P. Yates, B. Brown, R. Mulligan, P. Bourgeat, R. Veljanoski, S. Rainey-Smith, K. Ong, R. Williams, S. Burnham, S. Laws, O. Salvado, K. Taddei, L. Macaulay, R. Martins, D. Ames, C. Masters, C. Rowe, “En attendant Centiloid”, Advances in Research, vol. 2, pp. 723-729, Jul 2014.
  69. Voyle, D. Baker, S. Burnham, A. Covin, C. Tan Hehir, C. Bazenet, S. Lovestone, S. Kiddle, R. Dobson, “Blood protein markers of Neocortical Amyloid Burden: A candidate study using SOMAscan technology”, Journal of Alzheimer’s Disease, vol. 46, pp. 947-961, Jul 2015.
  70. Wagholikar, A. Nguyen, M. Fung, “A Method for Matching Patients to Advanced Prostate Cancer Clinical Trials”, electronic Journal of Health Informatics, vol. 8, pp. 1-6, Mar 2014.
  71. Williams, J. Crilly, J. Souter, K. Veach, N. Good, “A state wide validation and utilisation study of the Queensland emergency nursing workforce tool”, Journal of Nursing Management, vol. 22, pp. 1076-1088, Nov 2014.
  72. Zhang, D. Jhaveri, V. Marshall, D. Bauer, J. Edson, R. Narayanan, G. Robinson, A. Lundberg, P. Bartlett, N. Wray, Q. Zhao, “A comparative study of techniques for differential expression analysis on RNA-Seq data”, PLoS ONE, vol. 9, pp. e103207, Aug 2014.
  73. Zhou, O. Salvado, V. Dore, P. Bourgeat, P. Raniga, L. Macaulay, D. Ames, C. Masters, K. Ellis, V. Villemagne, C. Rowe, J. Fripp, t. AIBL Research Group, “MR-less surface-based amyloid assessment based on 11C PiB PET”, PLoS ONE, vol. 9, pp. e84777(14 pp), Jan 2014.
  74. Zuccon, D. Kotzur, A. Nguyen, A. Bergheim, “De-identification of health records using Anonym: effectiveness and robustness across datasets”, Artificial Intelligence in Medicine, vol. 61, pp. 145–151, Jul 2014.
  75. Frost, Y. Kanagasingam, L. Macaulay, “Ocular biomarkers for neurodegenerative and systemic disease”, Medical Journal of Australia, vol. 201, pp. 128-129, Nov 2014.
  76. Koopman, “Semantic Search as Inference: Applications in Health Informatics”, SIGIR Forum, vol. 48, pp. 116-117, Dec 2014.
  77. Xia, S. Chandra, C. Engstrom, M. Strudwick, S. Crozier, J. Fripp, “Automatic hip cartilage segmentation from 3D MR images using arc-weighted graph searching”, Physics in Medicine and Biology, vol. 59, pp. 7245-7266, Nov 2014.

Conference Papers – 2014

Book Chapters
  1. Bauer, P. Szul, F. Buske, “Personalized cloud-computed genomics at health-system-relevant scale”, Big Data 2014, Melbourne, VIC. Australia, 3-4 April, 2014.
  2. Bhuiyan, “An Effective Automated System for Grading Severity of Retinal Arteriovenous Nicking in Colour Retinal Images”, EMBC 2014, Chicago, USA, 26/08/2014.
  3. Cai, Z. Huang, X. Zhu, Q. Zhang, X. Li, “Multi-output regression with tag correlation analysis for effective image tagging”, 19th International Conference on Database Systems for Advanced Applications (DASFAA 2014), Bali, Indonesia, 21-24 April, 2014.
  4. Chen, T. Bednarz, P. Szul, D. Wang, Y. Arzhaeva, N. Burdett, A. Khassapov, J. Zic, S. Nepal, T. Gureyev, J. Taylor, “Galaxy + Hadoop: Toward a Collaborative and Scalable Image Processing Toolbox in Cloud”, 3rd International Workshop on Cloud Computing and Scientific Applications (CCSA), Berlin, Germany, December 2-5, 2013.
  5. Cheng, J. Doecke, R. Sharples, V. Villemagne, C. Fowler, A. Rembach, L. Macaulay, C. Masters, A. Hill, “Exosomal miRNA biomarkers for diagnosis of Alzheimer’s disease”, Keystone symposia: Alzheimer’s Disease – From Fundamental Insights to Light at the End of the Translational Tunnel (Q8), Keystone Colorado, March 2-7.
  6. De Vine, G. Zuccon, B. Koopman, L. Sitbon, P. Bruza, “Medical Semantic Similarity with a Neural Language Model”, Conference of Information and Knowledge Management (CIKM), Shanghai, China, 3-7 November, 2014.
  7. Doecke, Y. Wang, K. Baggerly, “Modulation of mRNA and miRNA expression via DNA methylation: master regulators of cancer specific gene expression”, GeneMappers, Barossa Valley, May 11-14.
  8. Dowling, P. Pichler, J. Sun, D. Rivest-Henault, S. Ghose, J. Martin, C. Wratten, P. Stanwell, J. Fripp, P. Greer, “CT substitute derived from MRI for external beam prostate radiotherapy”, European Society for Radiotherapy and Oncology (ESTRO 33), Vienna, Austria, 4-8 April, 2014.
  9. Dowling, P. Pichler, J. Sun, D. Rivest-Henault, S. Ghose, J. Martin, C. Wratten, J. Fripp, P. Greer, “CT substitute derived from MRI for external beam prostate radiotherapy”, MR in RT Symposium, Washington University, May 22-23 2014.
  10. Duche, P. Raniga, G. Egan, O. Acosta, O. Salvado, G. Gambarota, H. Saint-Jalmes, “A comparative study of two partial volume estimation methods with MP2RAGE data at 3T”, Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10-16 May, 2014.
  11. Fazlollahi, F. Meriaudeau, P. Yates, V. Villemagne, C. Rowe, O. Salvado, P. Bourgeat, “Efficient machine learning framework for computer-aided detection of cerebral microbleeds using the radon transform”, 11th International Symposium on Biomedical Imaging (ISBI), 2014 IEEE, Beijing, China, 29 April – 2 May, 2014.
  12. Frost, Y. Kanagasingam, L. Macaulay, M. Koronyo-Hamaoui, Y. Koronyo, D. Biggs, S. Verdooner, K. Black, K. Taddei, T. Shah, S. Rainey-Smith, P. Bourgeat, O. Salvado, W. Wilson, J. Doecke, V. Villemagne, C. Rowe, R. Martins, “Retinal amyloid fluorescence imaging predicts cerebral amyloid burden and alzheimer’s disease”, Alzheimer’s Association International Conference, Copenhagen, Denmark, 12-15 July 2014.
  13. Hassanzadeh, A. Nguyen, G. Tudor, J. Hunter, “Load Balancing for Imbalanced Data Sets: Classifying Scientific Artefacts for Evidence Based Medicine”, The 13th Pacific Rim International Conference on Artificial Intelligence, Gold Coast, Queensland, Australia, December 1-5, 2014.
  14. Heinrich, M. Burch, S. O’Donoghue, “On the Use of 1D, 2D, and 3D Visualisation for Molecular Graphics”, IEEE VisWeek, Paris, France, 09.11.2014 – 14.11.2014.
  15. Hill, L. Cheng, J. Doecke, R. Sharples, V. Villemagne, C. Fowler, A. Rembach, L. Macaulay, C. Masters, “Exosomal mirna as biomarkers for diagnosing alzheimer’s disease”, Alzheimer’s Association International Conference, Copenhagen, Denmark, 12-15 July 2014.
  16. Hortle, B. Nijagal, S. Lampkin, D. Bauer, M. McConville, B. McMorran, S. Foote, G. Burgio, “A role for AMP Deaminase in malaria resistance”, ASP Annual Conference, Canberra, 30th June 3rd July 2014.
  17. Khanna, J. Boyle, N. Good, J. Lind, “Mid-Term NEAT Review: Analysing the Improvements in Hospital ED Performance”, Health Informatics Conference (HIC 2014), Melbourne, Australia, 11-14 August 2014.
  18. Khanna, J. Boyle, N. Kent, N. Good, “Precise Prediction for Managing Chronic Disease Readmissions”, 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’14), Chicago, 26-30 August 2014.
  19. Khanna, J. Boyle, K. Zeitz, “Flexing Bed Stock : A Hospital Capacity Management Case Study”, 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’14), Chicago, USA, August 26-30, 2014.
  20. Kholghi, L. Sitbon, G. Zuccon, A. Nguyen, “Factors Influencing Robustness and Effectiveness of Conditional Random Fields in Active Learning Frameworks”, The Australasian Data Mining Conference (AusDM), Queensland University of Technology, Gardens Point, Brisbane, 27-28 November 2014.
  21. Koopman, G. Zuccon, “Understanding Negation and Family History to Improve Clinical Information Retrieval”, ACM International Conference on Research in Information Retrieval (SIGIR), Gold Coast, 6 July 2014.
  22. Koopman, G. Zuccon, “Why Assessing Relevance in Medical IR is Demanding”, Workshop on Medical Information Retrieval, Gold Coast, 11 July 2014.
  23. Koopman, G. Zuccon, “Document Timespan Normalisation and Understanding Temporality for Clinical Records Search”, Australasian Document Computing Symposium, Melbourne, 27–28 November, 2014.
  24. Li, L. Alem, M. Varnfield, B. Celler, “A study on the implementation of large-scale home telemonitoring service”, CSCW’14 Companion, 17th ACM Conference on Computer Supported Cooperative Work & Social Computing, Baltimore, MD. USA, 15-19 February, 2014.
  25. Martins, E. Hone, J. Doecke, S. Pedrini, V. Gupta, “Plasma-based protein biomarker panel for alzheimer’s disease: longitudinal data from australian imaging biomarkers and lifestyle study of aging”, Alzheimer’s Association International Conference, Copenhagen, Denmark, 12-15 July 2014.
  26. Metke Jimenez, S. Karimi, C. Paris, “Evaluation of Text-Processing Algorithms for Adverse Drug Event Extraction from Social Media”, International Workshop on Social Media Retrieval and Analysis, Gold Coast, Australia, July 11, 2014.
  27. Mirhosseini, G. Zuccon, B. Koopman, A. Nguyen, M. Lawley, “Medical Free-Text to Concept Mapping as an Information Retrieval Problem”, Australian Document Computing Symposium, Melbourne, 29 November, 2014.
  28. Mitra, K. Shen, S. Ghose, P. Bourgeat, J. Fripp, O. Salvado, B. Campbell, S. Palmer, A. Connelly, L. Carey, S. Rose, “Predicting poststroke depression from brain connectivity”, MICCAI-Computational Diffusion MRI (CDMRI), Boston, 14.09.2014 to 18.09.2014.
  29. Pichler, J. Dowling, J. Sun, D. Rivest-Henault, S. Ghose, J. Martin, J. Fripp, C. Wratten, P. Greer, “Development of MR-based prostate planning: the HiP-MRI project”, 2014 Combined Scientific Meeting, Melbourne, 4-7 September 2014.
  30. Qi, Q. Zhang, J. Qi, “A Novel Method for Modelling Cellular Response Genome Stress by Combined Gene- Environment Network (GEN) and Kinetic Theory Framework”, 19th IFAC World Congress, South Africa, 24/8/2014.
  31. Rembach, J. Doecke, F. Stingo, C. Peterson, B. Roberts, L. Macaulay, K. Ellis, R. Martins, D. Ames, C. Masters, “Bayesian graphical network analyses reveals complex biological interactions specific to Alzheimer’s disease”, Alzheimer’s Association International Conference, Copenhagen, Denmark, 12-15 July 2014.
  32. Rembach, S. Maher, F. Mooney, T. Nash, L. Vidaurre, Q. Li, C. Fowler, K. Pertile, B. Trounson, R. Rumble, S. Rainey-Smith, L. Evered, B. Silbert, S. Laws, K. Taddei, L. Macaulay, D. Darby, R. Martins, S. Collins, C. Masters, J. Doecke, “Cerebrospinal fluid biomarkers are not influenced by gravity drip or aspiration extraction methodology”, Alzheimer’s Association International Conference, Copenhagen, Denmark, 12-15 July 2014.
  33. Rivest-Henault, P. Greer, J. Fripp, J. Dowling, “Structure-guided nonrigid registration of CT–MR pelvis scans with large deformations in MR-based image guided radiation therapy”, 2nd International Workshop on Clinical Image-based Procedures (CLIP 2013), Nagoya, Japan, 22 September, 2013.
  34. Rivest-Henault, S. Ghose, J. Pluim, J. Fripp, J. Dowling, “Fast multiatlas selection using composition of transformations for radiation therapy planning”, MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data, Boston, Massachusetts, USA, 14-18 September 2014.
  35. Shahabi Kargar, S. Khanna, N. Good, A. Sattar, J. Lind, J. O’Dwyer, “Predicting Procedure Duration to Improve Scheduling of Elective Surgeries”, The 13th Pacific Rim International Conference on Artificial Intelligence, Gold Coast, Australia, 1-5 December 2014.
  36. Shen, S. Rose, J. Fripp, K. McMahon, G. de Zubicaray, N. Martin, P. Thompson, M. Wright, O. Salvado, “Heritability of white matter fibres based on Fibre Orientation Distribution (FOD) measurements of hardi data”, Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10-16 May 2014.
  37. Thorburn, S. Khanna, J. Boyle, N. Good, M. Steyn, “Analysis of operating theatre utilisation to drive efficiency and productivity improvements”, HIC2014 – Health Informatics Conference, Melbourne, Australia, 11-14 August 2014.
  38. Thorburn, S. Khanna, J. Boyle, R. Wilson, M. Steyn, N. Good, “Elective Surgery Cancellations and Theatre Utilization”, 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’14), Chicago, USA, August 26-30, 2014.
  39. Varnfield, M. Karunanithi, H. Ding, D. Bird, B. Oldenburg, “Telehealth for chronic disease management: do we need to RE-AIM”, Global Telehealth 2014 (GT2014), Durban, South Africa, 10-11 November 2014.
  40. Veera, K. Lim, J. Dowling, S. Ghose, L. Holloway, S. Vinod, “Dedicated Magnetic Resonance Imaging (MRI) simulation for cervical cancer radiation treatment planning (RTP): Assessing the impact on target volume delineation.”, 2014 Combined Scientific Meeting, Melbourne, 4-7 September 2014.
  41. Walker, L. Holloway, P. Metcalfe, J. Dowling, G. Liney, “Phantom development for full field of view distortion assessment of an MRI simulator”, MR in RT Symposium, Washington University, 22-23 May 2014.
  42. Walker, L. Holloway, P. Metcalfe, J. Dowling, G. Liney, “An assessment of continuous table acquisition (TimCT) for improving MRI distortion for radiotherapy imaging using a new phantom for assessing 3D geometric distortion”, 2014 Combined Scientific Meeting, Melbourne, 4-7 September 2014.
  43. Walker, V. Batumalai, K. Dundas, G. Delaney, M. Boxer, E. Koh, M. Yap, P. Metcalfe, J. Dowling, G. Liney, L. Holloway, “Impact of MRI geometric distortion on tangential IMRT breast plans”, 2014 Combined Scientific Meeting, Melbourne, 4-7 September 2014.
  44. Wang, X. Lin, Q. Zhang, “Shifting hypergraphs by probabilistic voting”, 18th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2014), Tainan, Taiwan, 13 – 16 May, 2014.
  45. Wang, X. Lin, Q. Zhang, “Exploiting Correlation Consensus: Towards Subspace Clustering for Multi-modal Data”, ACM Multimedia 2014, Orlando, Florida, USA, 3~7 November 2014.
  46. Zhang, Y. Su, P. Yu, “Assisting an elderly with early dementia using wireless sensors data in smarter safer home”, 15th International Conference on Informatics and Semiotics in Organisations (ICISO 2014), Shanghai, China, 23-24 May, 2014.
  47. Zhang, M. Karunanithi, D. Bradford, Y. van Kasteren, “Activity of Daily Living Assessment through Wireless Sensor Data”, 36th Annual International Conference of the IEEE EMBC, Chicago, 26 August 2014.
  48. Zuccon, B. Koopman, “Integrating Understandability in the Evaluation of Consumer Health Search Engines”, SIGIR Workshop on Medical Information Retrieval, Gold Coast, Australia, 11 July 2014.
  49. Zuccon, B. Koopman, “Exploiting Inference from Semantic Annotations for Information Retrieval: Reflections from Medical IR”, Seventh International Workshop on Exploiting Semantic Annotations in Information Retrieval, Shanghai, 28th October 2014.
  50. Bauer, “NGSANE: A Lightweight Production Informatics and Presentation Framework for Mutation Detection in High-throughput Sequencing Data.”, 10th Australasian Mutation Detection Meeting, Whitsundays, Qld, Australia, 1-4 July 2014.
  51. Bauer, J. Ross, T. Peters, K. Duesing, D. Grice, P. Greenfield, S. Nielsen, B. Draganic, S. Smith, P. Pockney, R. Scott, G. Hannan, “A Systems Biology Approach to Understanding the Link between Obesity and Colorectal Cancer”, 10th Australasian Mutation Detection Meeting, Daydream Island, QLD, 1-4 September, 2014.
  52. Bauer, J. Ross, T. Peters, K. Duesing, D. Grice, D. Li, P. Greenfield, S. Nielsen, R. Scott, G. Hannan, “Imbalanced microbes and genomic misrelation is associated with colorectal cancer”, The International Systems Biology Conference, Melbourne, 14-18 September 2014.
  53. Bhuiyan, U. Nguyen, R. Kawasaki, E. Lamoureux, P. Mitchell, K. Ramamohanarao, T. Wong, Y. Kanagasingam, “Inter- and Intra-observer agreement of newly developed semi-automated software for retinal artery-vein nicking quantification and severity grading”, ARVO 2014 Annual Meeting, Orlando, Florida. USA, 4-8 May, 2014.
  54. Burnham, W. Wilson, L. Macaulay, N. Raghavan, D. Baker, M. Ropacki, G. Novak, D. Ames, K. Ellis, R. Martins, P. Maruff, C. Masters, G. Romano, C. Rowe, G. Savage, R. Twyman, V. Narayan, “Comparison of Three Normative Data Correction Approaches: A Cross Sectional Evaluation in the AIBL Study”, Alzheimer’s Association International Conference 2014, Copenhagen, Denmark, July 2014.
  55. Burnham, W. Wilson, L. Macaulay, N. Raghavan, D. Baker, M. Ropacki, G. Novak, D. Ames, K. Ellis, R. Martins, P. Maruff, C. Masters, G. Romano, C. Rowe, G. Savage, R. Twyman, V. Narayan, “Novel Statistically-Derived Composite Measures for Assessing the Efficacy of Disease-Modifying Therapies in Prodromal AD Trials: An AIBL Study”, Alzheimer’s Association International Conference 2014, Copenhagen, Denmark, July 2014.
  56. Burnham, D. Ames, A. Bush, L. Cobiac, J. Doecke, K. Ellis, N. Faux, R. Head, H. Kiiveri, S. Laws, R. Martins, L. Macaulay, C. Rowe, C. Masters, W. Wilson, V. Villemagne, “Predicting Alzheimer’s disease from a blood-based biomarker profile: Results from AIBL at 54 Months”, Alzheimer’s Association International Conference 2014, Copenhagen, Denmark, July 2014.
  57. Buske, S. Hilali, D. Bauer, S. Clark, “Utilising graph databases to analyse the 3D organisation of chromatin”, International Conference on Bioinformatics, Sydney, NSW, Australia, 31 July – 2 August 2014.
  58. Cespedes, J. McGree, C. Drovandi, K. Mengersen, J. Doecke, J. Fripp, “Modelling dynamics of brain atrophy via Bayesian mixed effect regression in healthy aging and Alzheimer’s disease cohorts”, Bayes on the Beach, Gold Coast, 10-12 November 2014.
  59. Chenery, J. Liddle, D. Ireland, D. Theodoros, J. Wiles, S. McBride, M. Karunanithi, H. Ding, R. Lamont, P. Silburn, “Monitoring the impact of Parkinson’s disease on community life using everyday technology: Development of a remote monitoring platform using smartphones.”, The MDS 18th International Congress of Parkinson’s Disease and Movement Disorders Abstract Number: 551538, Stockholm, June 2014.
  60. Coles, C. Cao, C. Dumas, “ETrack – an affordable ergonomic assessment tool for surgical settings”, SAGES 2014 Annual Meeting, Salt Lake City, Utah. USA, 2-5 April, 2014.
  61. De Visser, D. Conlan, J. Passenger, C. Dumas, O. Salvado, “A new locally developed Virtual Reality Colonoscopy Simulator”, SimHealth 2014, Adelaide, SA, 25-28/08/2014.
  62. Dods, J. Boyle, S. Khanna, J. O’Dwyer, D. Sier, R. Sparks, N. Good, D. Ireland, C. O’Keefe, D. Hansen, “Big insights into patient flow”, Big Data 2014 (BD14), Melbourne, VIC. Australia, 3-4 April, 2014.
  63. Dore, P. Bourgeat, J. Fripp, R. Martins, L. Macaulay, C. Masters, D. Ames, C. Rowe, O. Salvado, V. Villemagne, “MR-Less Cortical Surface-projection of 11C and 18F PET scans with CAPAIBL”, Alzheimer’s Association International Conference, Copenhagen, Denmark, July 13-17, 2014.
  64. Dumas, T. Coles, D. Fielding, C. Cao, “MedImQ: A medical image diagnostic learning and assessment tool”, SAGES 2014 Annual Meeting, Salt Lake City, USA, 2-5 April 2014.
  65. Fazlollahi, F. Meriaudeau, L. Giancardo, C. Rowe, V. Villemagne, P. Yates, O. Salvado, P. Bourgeat, “A machine learning approach for computer-aided detection of cerebral microbleed using high-order shape features”, Joint Annual Meeting ISMRM-ESMRMB, Milan, ITALY, 10-16 May, 2014.
  66. Fiori, K. Pannek, A. Guzzetta, S. Rose, R. Boyd, “Validation of semi-quantitative structural MRI scale against inter and intra-hemispheric connections using a whole brain diffusion approach in children with congenital hemiplegia”, 7th Biennial Conference of the Australasian Academy of Cerebral Palsy and Developmental Medicine (AusACPDM 2014), Hunter Valley, NSW. Australia, 11-14 March, 2014.
  67. Ireland, J. Liddle, H. Chenery, S. McBride, “A remote monitoring system for people with Parkinson’s disease: Using everyday technology to measure outcomes.”, 2014 ARATA National conference “Actively Choosing Technology”, Canberra, 20-22 August.
  68. Kanagasingam, J. Boyle, J. Vignarajan, D. Xiao, M. Tay-Kearney, “Broadband Satellite Based Tele-Eye care for Indigenous and Older Australians Living in Very Remote Areas”, 19th ISfTeH Annual International Conference, Paris, 16-17 October 2014.
  69. Koopman, G. Zuccon, “Relevation!: An Open Source System for Information Retrieval Relevance Assessment”, SIGIR Demonstrations, Gold Coast, 6 July 2014.
  70. Lawley, “Avoiding Excessive Description Logics Through Concrete Domains”, SNOMED CT Implementation Showcase 2014, Amsterdam, 30-31 Oct 2014.
  71. Liddle, D. Ireland, S. Brauer, R. Lamont, S. McBride, M. Karunanithi, H. Ding, L. Gustafsson, P. Silburn, H. Chenery, “Community life with Parkinson’s disease: Developing Lifespace-movement and Lifespace-Quality of life maps to understand participation and outcomes.”, MDS 18th International Congress of Parkinson’s Disease and Movement Disorders, Stockholm, June 8-12 2014.
  72. Metke Jimenez, “ASE: A Search Engine for Semantically Annotated Documents”, SNOMED CT Implementation Showcase 2014, Amsterdam, Netherlands, October 30 – 31, 2014.
  73. Mitra, J. Fripp, K. Shen, K. Pannek, P. Bourgeat, O. Salvado, B. Campbell, S. Palmer, L. Carey, S. Rose, “Automated detection of brain regions associated with post-stroke depression: a hypothesis”, Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10-16 May, 2014.
  74. Mitra, S. Ghose, P. Bourgeat, O. Salvado, S. Rose, B. Campbell, A. Connelly, S. Palmer, L. Carey, J. Fripp, “Automated lesion detection from multimodal brain MRI using Markov random fields and random forest”, Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10-16 May, 2014.
  75. O’Brien, F. Buske, D. Bauer, “Scalable Clustering of Genotype Information using MapReduce”, International Conference on Bioinformatics, Sydney, NSW, Australia, 31 July – 2 August 2014.
  76. Pannek, J. George, P. Colditz, R. Boyd, S. Rose, “Advanced diffusion weighted magnetic resonance imaging of the extremely preterm infant’s brain”, 7th Biennial Conference of the Australasian Academy of Cerebral Palsy and Developmental Medicine (AusACPDM 2014), Hunter Valley, NSW. Australia, 11-14 March, 2014.
  77. Pannek, S. Fiori, A. Guzzetta, R. Boyd, S. Rose, “Assessment of the structural connectome in unilateral cerebral palsy reveals that altered connectivity is related with clinical function”, 7th Biennial Conference of the Australasian Academy of Cerebral Palsy and Developmental Medicine (AusACPDM 2014), Hunter Valley, NSW. Australia, 11-14 March, 2014.
  78. Pannek, J. George, P. Colditz, R. Boyd, S. Rose, “Early high b-value diffusion MRI of the preterm infant brain highlights radial organisation of the developing cortex”, Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, 10-16 May, 2014.
  79. Rainey-Smith, B. Brown, S. Gardener, J. Peiffer, M. Barnes, P. Bourgeat, H. Sohrabi, K. Taddei, A. Rembach, S. Laws, S. Burnham, K. Ellis, C. Masters, L. Macaulay, C. Rowe, V. Villemagne, D. Ames, R. Martins, “APOE genotype-dependent effects of diet and physical activity on cognition and Alzheimer’s-related pathology: Data from the AIBL Study of Ageing.”, Alzheimer’s Association International Conference 2014, Copenhagen, Denmark, July 2014.
  80. Ross, S. Mitchell, H. Drew, T. Ho, G. Brown, N. Saunders, K. Duesing, M. Buckley, R. Dunne, I. Beeston, K. Rand, A. McEvoy, M. Thomas, R. Baker, D. Wattchow, G. Young, T. Lockett, S. Pedersen, L. LaPointe, P. Molloy, “Colorectal cancer methylation biomarkers”, Keystone Symposia – Cancer Epigenetics, Santa Fe, NM, 4 February 2014.
  81. Rowe, V. Dore, P. Bourgeat, R. Buckley, R. Veljanoski, R. Williams, K. Ong, D. Ames, C. Masters, V. Villemagne, “Higher Aβ burden in subjective memory complainers: A flutemetamol sub-study in AIBL”, SNMMI Annual Meeting, St. Louis, Missouri, June 7-11, 2014.
  82. Sitbon, M. Kholghi, G. Zuccon, A. Nguyen, B. Koopman, M. Lawley, “Delivering Clinical Information Extraction Tools to Practitioners”, Macquarie University Workshop on Text Mining and Health, Sydney, 26 Sep, 2014.
  83. Szul, Y. Arzhaeva, R. Lagerstrom, D. Bauer, A. O’Brien, D. Wang, S. Nepal, J. Zic, J. Taylor, T. Bednarz, “Platform for Big Data and Visual Analytics”, eResearch Australasia 2014, Melbourne, 27-31 October.
  84. Szul, Y. Arzhaeva, L. Domanski, R. Lagerstrom, D. Bauer, A. O’Brien, D. Wang, S. Nepal, J. Zic, J. Taylor, T. Bednarz, “Platform for Big Data and Visual Analytics”, eResearch Australasia 2014, Melbourne, 27–31 October 2014.
  85. Varnfield, M. Karunanithi, H. Ding, C. Lee, D. Arnold, E. Honeyman, D. Walters, “Feasibility of implementing a mobile health home-based cardiac rehabilitation program”, Australian Cardiac Rehabilitation Association 2014, Novotel Brighton Beach, Sydney, 21st – 23rd August 2014.
  86. Villemagne, S. Burnham, P. Bourgeat, B. Brown, K. Ellis, R. Martins, O. Salvado, D. Ames, C. Masters, C. Rowe, “Preclinical effects of Aβ deposition on episodic memory and disease progression”, SNMMI Annual Meeting, St Louis, Misourri, June 7-11, 2014.
  87. Wagholikar, “Designing New Health Services for Advanced Prostate Cancer Patients: Challenges and Opportunities”, 15th Asia Pacific Prostrate Cancer Conference 2014, Melbourne, 31 August – 2 September 2014.
  88. Wilson, J. Fripp, K. Shen, R. Surowiec, C. Ho, “Three-dimensional morphological features for detection of degeneration in the PCL from magnetic resonance images at 3T: a feasibility study”, Joint Annual Meeting ISMRM-ESMRMB, Milan Italy, 10-16 May, 2014.
  89. Zuccon, B. Koopman, P. Bruza, “Towards Exploiting Inference from Semantic Annotations for Medical Information Retrieval”, Macquarie University Workshop on Natural Language of Clinical Text, Sydney, 26 September 2014.