HomeResearchProject ArchivesCancer Stage Interpretation System
Aim: to generate an accurate cancer stage from histo-pathology reports, and to use this information to help improve cancer management, both for individual patients and at a population-level.

Cancer Stage Interpretation System

Cancer Staging

The "stage" of a cancer is a categorisation of its progression in the body, and describes the extent of the primary tumour and any spread to local or distant body sites. While staging has a fundamental role in cancer management, due to the expertise and time required and the multi–disciplinary nature of the task, a definitive stage for cancer patients is not always collected. By automating the collation, analysis, summarising and classification of relevant patient data, the reliance on expert clinical staff can be reduced, improving the efficiency and availability of cancer staging.

The CSIS Software

The Cancer Stage Interpretation System (CSIS) technology uses the same guidelines as those used by clinicians in assigning a stage based on histo-pathology reports. The pathology report is divided into statements (sentences or part of a sentence) while the guidelines are divided into factors. Each statement in the report is then evaluated against each of the guideline factors for relevance and whether it is a positive or negative reference. Machine learning techniques are then used to teach the CSIS engine the set of statements in a pathology report which indicate that the report is describing a particular guideline factor.

In addition, an extract is produced consisting of sentences that were found to contribute to the final staging decision, and their relationship to criteria from the formal staging guidelines for lung cancer.

Lung Cancer Clinical Trial

In collaboration with the Queensland Cancer Control Analysis Team (QCCAT), the software prototype system was used within a clinical trial context. The CSIS engine was trained on a set of 710 pathology reports describing surgical resections of the lung. The aim was to produce an accurate pathological T and N stage. The system was then formally trialled in a clinical setting on a previously unseen set of 179 lung cancer cases. The trial compared the automatic stage decisions from CSIS to the stages assigned by two expert pathologists.

The results of the trial showed that the automated stages produced were accurate enough for the purposes of population level research and for indicative staging of pathology reports prior to multi–disciplinary team meetings and have been published in the Journal of American Medical Informatics Association.

The CSIS software is now installed at QCCAT.

This work has been extended to include other sorts of medical free text, such as radiology reports (for M staging) as well as automatic population of synoptic reports for lung cancer, and continues in the Medical Free Text Processing project.

Last Updated on Wednesday, 28 September 2011 08:25

Go to top


Dr Anthony Nguyen

 +61 7 3253 3637
This email address is being protected from spambots. You need JavaScript enabled to view it.