Research Papers: 2007

Acosta Tamayo,O.; Frimmel,H.; Fenster,A., and Ourselin,S.
Filtering and restoration of structures in 3D ultrasound images.
4th IEEE International Symposium on Biomedical Imaging 12 - 15 Apr 2007, pp888-891

Bidargaddi,N.; Klingbeil,L.; Sarela,A.; Boyle,J.; Cheung,V.; Yelland,C.; Karunanithi,M., and Gray,L.M.
Wavelet based approach for posture transition estimation using a waist worn accelerometer
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 23 - 26 Aug 2007, IEEE, 2007: 1884-1887

Bidargaddi,N.; Sarela,A.; Klingbeil,L., and Karunanithi,M.
Detecting walking activity in cardiac rehabilitation by using accelerometer
3rd International Conference on Intelligent Sensors, Sensor Networks and Information Processing 03 - 06 Dec 2007, IEEE, 2007: 555-560

Bourgeat,P.; Fripp,J.; Sanwell,P.; Ramadan,S., and Ourselin,S.
MR Image Segmentation of the Knee Bone using Phase Information
Medical Image Analysis 03 - 06 Dec 2007, 2007, Jul; 11(4):325-335

Boyle,J.; Bidargaddi,N.; Sarela,A., and Karunanithi,M.
Ambulatory Care Delivery for Chronic Disease Management
6th IASTED International Conference on Biomedical Engineering 13 - 15 Feb 2008, pp384-389

Boyle,J.; Bidargaddi,N.; Sarela,A., and Karunanithi,M.
Deriving Respiration from Ambulatory Single Lead ECG
Innovations in Cardiovascular Disease, The Australian Resource Centre for Healthcare Innovations Toolkit Seminar 14 Nov 2007, pp218-219

Chan,Z.; Croll,P.; Maeder,A., and Hansen,D.
Agent-based Secure Aggregation of Distributed Health Data
9th International Workshop on Digital Mammography 20 - 23 Jul 2008

Diep,T.M.; Bourgeat,P., and Ourselin,S.
Efficient use of cerebral cortical thickness to correct brain MR segmentation
4th IEEE International Symposium on Biomedical Imaging 12 - 15 Apr 2007, pp592-595

Dowling,J.
Graph-theoretic techniques for web content mining
International Association for Pattern Recognition Newsletter 12 - 15 Apr 2007, 2007, Jan; 29(1):12-14

Dowling,J.; Planitz,B.; Maeder,A.; Du,J.; Pham,B.; Boyd,C.; Chen,S.; Bradley,A., and Crozier,S.
A comparison of DCT and DWT block based watermarking on medical image quality
6th International Workshop on Digital Watermarking 03 - 05 Dec 2007, pp470-483

Dowling,J.
Mathematics of Digital Images
International Association for Pattern Recognition Newsletter 03 - 05 Dec 2007, 2007, Apr; 29(2):17-18

Frimmel,H.; Acosta Tamayo,O.; Fenster,A., and Ourselin,S.
Reduction of attenuation effects in 3D Transrectal ultrasound images
SPIE Medical Imaging 2008 17 - 21 Feb 2008

Fripp,J.; Crozier,S.; Warfield,S.K., and Ourselin,S.
Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee
Physics in Medicine and Biology 17 - 21 Feb 2008, 2007, Mar; 52(6):1617-1631

Fripp,J.; Warfield,S.K.; Crozier,S., and Ourselin,S.
Automatic segmentation of the bones from MR images of the knee
4th IEEE International Symposium on Biomedical Imaging 12 - 15 Apr 2007, pp336-339

Fripp,J.; Bourgeat,P.; Crozier,S., and Ourselin,S.
Segmentation of the Bones in MRIs of the Knee Using Phase, Magnitude, and Shape Information
Academic Radiology 12 - 15 Apr 2007, 2007, Oct; 14(10):1201-1208

Hansen,D.
From Biology To Medicine: Using Semantics To Generate Information
Health Librarians Australia Newsletter 12 - 15 Apr 2007, HLA News, April 2007, p15

Hellier,D.; Passenger,J.; Appleyard,M., and Ourselin,S.
Development of a new Colonoscopy Skills Trainer using Virtual Reality and Haptic Feedback
SimTecT 2007 04 - 07 Jun 2007, pp8

Hibberd,M.; Lawley,M., and Raymond,K.
Forensic Debugging Of Model Transformations
10th International Conference on Model Driven Engineering Languages and Systems 30 Sep - 05 Oct 2007, Model Driven Engineering Languages and Systems, Volume 4735/2007 pg 589-604

Jakobsen,I.
Ontologies for Skeleta lDysplasias
MedSemWeb 2007 19 Aug 2007, pp5

Joshi,B.; Fedorov,A.; Chrisochoides,N.; Warfield,S.K., and Ourselin,S.
Application-driven quantitative assessment of approaches to mesh generations
4th IEEE International Symposium on Biomedical Imaging 12 - 15 Apr 2007, pp1160-1163

Karunanithi,M.
Monitoring Technology for the Elderly Patient
Future Drugs 12 - 15 Apr 2007, pp267-277

Karunanithi,M.; Sarela,A.; Boyle,J.; Bidargaddi,N., and Maeder,A.
A Care Assessment System Supporting Community-Based Healthcare Environment
12th International Health (Medical) Informatics Congress 20 - 24 Aug 2007

Khanna,S.; Sattar,A.; Maeder,A., and Stantic,B.
Intelligent Scheduling in Complex Dynamic Distributed Environments
12th International Health (Medical) Informatics Congress 20 - 24 Aug 2007, pp78

Lawley,M.
Exploiting SNOMED for Querying and Data Integration with Local Ontology Extensions
MedSemWeb 2007 19 Aug 2007, pp4

Macrae,F.; Slattery,M.; St John,D.; O'Dwyer,M., and Budd,K.
Analysis of 25 Years of Screening for Colorectal Neoplasia Based on Moderate Famiilial Risk
2nd Biennial Scientific Meeting of International Society for Gastrointestinal Hereditary Tumours 27 - 30 Mar 2007

McCowan,I.; Moore,D.; Nguyen,A.; Bowman,R.; Clarke,B.; Duhig,E., and Fry,M.
Collection of Cancer Stage Data by Classifying Free-text Medical Reports
Journal of the American Medical Informatics Association 27 - 30 Mar 2007, 2007, Nov; 14(6):736-745

McCowan,I., and Harden,H.
Towards Automated Observational Analysis of Leadership in Clinical Networks
Conference on Information Technology in Health Care 28 - 30 Aug 2007, pp133-141

McCowan,I.; Moore,D.; Nguyen,A., and Courage,M.
Automated Collection of Cancer Stage Data from Free-Text Pathology Reports
Joint NCRI Informatics - CABIG Conference 12 - 13 Jul 2008, pp24-25

Moore,D.; McCowan,I.; Nguyen,A., and Fry,M.
Trial Evaluation of Automatic Lung Cancer Staging From Pathology Reports
12th International Health (Medical) Informatics Congress 20 - 24 Aug 2007

Mueller,D.; Maeder,A., and O'Shea,P.
Tagged Volume Rendering of the Heart
10th International Conference on Medical Image Computing and Computer Assisted Intervention 29 Oct - 02 Nov 2007, LNCS 4791/2007 pp194-201

Nguyen,A.; Moore,D.; McCowan,I., and Courage,M.
Multi-class Classification of Cancer Stages from Free-text Histology Reports using Support Vector Machines
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 23 - 26 Aug 2007, IEEE, 2007: 5140-5143

Nguyen,A.; Moore,D., and McCowan,I.
Unsupervised Clustering of Free-Living Human Activities using Ambulatory Accelerometry
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 23 - 26 Aug 2007, IEEE, 2007: 4895-4898

Pang,C.; Zhang,Q.; Hansen,D., and Maeder,A.
Building Data Synopses within a Known Maximum Error Bound
9th Asia-Pacific Web Conference and the 8th International Conference on Web-Age Information Management 16 - 18 Jun 2007, LNCS 4505/2007 pp463-470

Pang,C.; Hansen,D., and Maeder,A.
Managing RBAC Models with Transitive Relations
Physics in Medicine and Biology 16 - 18 Jun 2007, pp139-148

Raniga,P.; Bourgeat,P.; Ourselin,S.; Villemagne,V.; O'Keefe,G., and Rowe,C.
Automatic calculation of SUVR in PIB PET using PET images
4th IEEE International Symposium on Biomedical Imaging 12 - 15 Apr 2007, pp348-351

Raniga,P.; Bourgeat,P.; O'Keefe,G.; Villemagne,V.; Rowe,C., and Ourselin,S.
Spline Based Inhomogeneity correction for 11C-PIB PET Segmentation Using Expectation Maximization
10th International Conference on Medical Image Computing and Computer Assisted Intervention 29 Oct - 02 Nov 2007, LNCS 4791/2007 pp228-235

Salvado,O.; Acosta Tamayo,O.; Bourgeat,P.; Zuluaga,M., and Ourselin,S.
Fuzzy Classification of brain MRI using Markov random field and a priori knowledge: weighted fuzzy C-means
Medical Physics 29 Oct - 02 Nov 2007, IEEE, 2007: 1-8

Sarela,A.; Bidargaddi,N., and Klingbeil,L.
Evaluation of the Catapult MinimaxX Device: Catapult Innovation Inc.
CSIRO ICT Centre 29 Oct - 02 Nov 2007

Taylor,Z.; Cheng,M., and Ourselin,S.
High-Speed Nonlinear Finite Element Analysis of Surgical Simulation Using Graphics Processing Units
IEEE Transactions in Medical Imaging 29 Oct - 02 Nov 2007, 2008; 27(5):650-663

Tizon,X.; Lin,Q.; Hansen,T.; Borgefors,G.; Johansson,L.; Ahlstrom,H., and Frimmel,H.
Identification of the main arterial brances in whole-body contrast-enhanced MRA in elderly subjects using limited user interaction and fast marching
Journal of Magnetic Resonance Imaging 29 Oct - 02 Nov 2007, 2007, Apr; 25(4):806-814

Vrtovec,T.; Ourselin,S.; Gomes,L.; Likar,B., and Pernus,F.
Automated generation of curved planar reformations from MR images of the spine
Physics in Medicine and Biology 29 Oct - 02 Nov 2007, 2007, May; 52(10):2865-2878

Wood,D.; Marshall,M.; Cai,S.; Bryant,M.; Hansen,D., and Gorse,D.
Integrated and Accessible Bioinformatics
Bioinformatics Australia 23 - 24 Oct 2007